Browse Element(s) Details


OsAffx.18050.1.S1_at

Description tigr:9637.m03309
TID=OsAffx.18050.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F20B17.10
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3883011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38777Os.9868.1.S1_at11/119+22277811..22283715molybdenum cofactor sulfurase family protein, putative, expressed
LOC_Os09g38777Os.10545.1.S1_at11/119+22277811..22283715molybdenum cofactor sulfurase family protein, putative, expressed
LOC_Os09g38790Os.37725.1.A1_s_at11/119+22286696..22291247Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38790Os.8410.1.S1_at11/119+22286696..22291247Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38800OsAffx.30194.2.S1_at11/119+22291930..22295105wall-associated kinase-like 1, putative
LOC_Os09g38800OsAffx.30194.1.S1_x_at1/119+22291930..22295105wall-associated kinase-like 1, putative
LOC_Os09g38814OsAffx.21820.1.S1_at2/119+22298687..22299046NA
LOC_Os09g38814OsAffx.21820.1.S1_x_at1/119+22298687..22299046NA
LOC_Os09g38830OsAffx.18050.1.S1_at11/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38830OsAffx.30194.1.S1_x_at1/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38830Os.50240.1.S1_at1/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38840OsAffx.30194.1.S1_x_at11/119+22311184..22314011wall-associated kinase-like 1, putative, expressed
LOC_Os09g38840OsAffx.30194.2.S1_at1/119+22311184..22314011wall-associated kinase-like 1, putative, expressed
LOC_Os09g38850Os.25404.1.A1_at6/119+22315284..22318271wall-associated kinase-like 1, putative, expressed
LOC_Os09g38860OsAffx.18052.1.S1_at11/119+22318388..22320008hypothetical protein
LOC_Os09g38870OsAffx.6521.1.S1_at11/119+22324708..22327628hypothetical protein
LOC_Os09g38880OsAffx.18053.1.S1_at11/119+22328946..22329182hypothetical protein
LOC_Os09g38890OsAffx.6522.1.S1_at11/119+22331328..22333002hypothetical protein
LOC_Os09g38890Os.49759.1.S1_x_at1/119+22331328..22333002hypothetical protein
LOC_Os09g38900Os.48092.1.A1_at11/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900Os.35344.18.S1_x_at10/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900Os.35344.3.S1_x_at9/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900OsAffx.22940.5.S1_x_at3/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900OsAffx.22940.5.S1_at2/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18050.1.S1_at--747--4271Chr09:22309334..22309358 (25 bp)
CCTGAGGATGATAGTCTTGTTGCAC
LOC_Os09g38830
OsAffx.18050.1.S1_at--921--7851Chr09:22309435..22309459 (25 bp)
GGTTAAAGAAGTAGCCATGTTAGCC
LOC_Os09g38830
OsAffx.18050.1.S1_at--396--2591Chr09:22309488..22309512 (25 bp)
AACGACCTACTATGAGGCAGGTGGA
LOC_Os09g38830
OsAffx.18050.1.S1_at--893--6311Chr09:22309513..22309537 (25 bp)
GATGACACTTGAAACTATTCGATCG
LOC_Os09g38830
OsAffx.18050.1.S1_at--59--5551Chr09:22309523..22309547 (25 bp)
GAAACTATTCGATCGTCATCACTAC
LOC_Os09g38830
OsAffx.18050.1.S1_at--1087--6391Chr09:22309533..22309557 (25 bp)
GATCGTCATCACTACAACAAGAAGT
LOC_Os09g38830
OsAffx.18050.1.S1_at--967--2451Chr09:22309548..22309572 (25 bp)
AACAAGAAGTGGTACCTAGTGTGGC
LOC_Os09g38830
OsAffx.18050.1.S1_at--837--4131Chr09:22309573..22309597 (25 bp)
CGCGGAGGAATCCAAGGAGAAACAT
LOC_Os09g38830
OsAffx.18050.1.S1_at--77--1571Chr09:22309607..22309631 (25 bp)
AGCTATCCGGTATGTGAGGGCACAA
LOC_Os09g38830
OsAffx.18050.1.S1_at--759--6132Chr09:22309622..22309646 (25 bp)
GAGGGCACAAGCATAGAGTCGAGTA
LOC_Os09g38830
OsAffx.18050.1.S1_at--522--1151Chr09:22309638..22309662 (25 bp)
AGTCGAGTAGACAATATAGCTATGA
LOC_Os09g38830
Target Sequence 
CCTGAGGATGATAGTCTTGTTGCACATTTCACTGCCCTACTCACACATGGCAACTTGGGTGACATACTTGATCCTCAGAT
GAATGAAGAGGGAGGTAAAGAGGTTAAAGAAGTAGCCATGTTAGCCGTGGCATGTGTCAAGTTGAAAGCAGATGAACGAC
CTACTATGAGGCAGGTGGAGATGACACTTGAAACTATTCGATCGTCATCACTACAACAAGAAGTGGTACCTAGTGTGGCC
GCGGAGGAATCCAAGGAGAAACATGTCTCATGGAGCTATCCGGTATGTGAGGGCACAAGCATAGAGTCGAGTAGACAATA
TAGCTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis