Browse Element(s) Details


Os.48092.1.A1_at

Description gb:CF321356
DB_XREF= gi:33693117
DB_XREF=HD--12-J09.g1
CLONE=HD--12-J09
TID=Os.48092.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.48092 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3890011/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38830OsAffx.18050.1.S1_at11/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38830OsAffx.30194.1.S1_x_at1/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38830Os.50240.1.S1_at1/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38840OsAffx.30194.1.S1_x_at11/119+22311184..22314011wall-associated kinase-like 1, putative, expressed
LOC_Os09g38840OsAffx.30194.2.S1_at1/119+22311184..22314011wall-associated kinase-like 1, putative, expressed
LOC_Os09g38850Os.25404.1.A1_at6/119+22315284..22318271wall-associated kinase-like 1, putative, expressed
LOC_Os09g38860OsAffx.18052.1.S1_at11/119+22318388..22320008hypothetical protein
LOC_Os09g38870OsAffx.6521.1.S1_at11/119+22324708..22327628hypothetical protein
LOC_Os09g38880OsAffx.18053.1.S1_at11/119+22328946..22329182hypothetical protein
LOC_Os09g38890OsAffx.6522.1.S1_at11/119+22331328..22333002hypothetical protein
LOC_Os09g38890Os.49759.1.S1_x_at1/119+22331328..22333002hypothetical protein
LOC_Os09g38900Os.48092.1.A1_at11/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900Os.35344.18.S1_x_at10/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900Os.35344.3.S1_x_at9/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900OsAffx.22940.5.S1_x_at3/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900OsAffx.22940.5.S1_at2/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38910Os.54238.1.S1_at11/119+22348258..22350996wall-associated kinase-like 1, putative, expressed
LOC_Os09g38920Os.20853.1.S1_at11/119+22351167..22353066Papain family cysteine protease containing protein, expressed
LOC_Os09g38920OsAffx.22518.1.S1_x_at1/119+22351167..22353066Papain family cysteine protease containing protein, expressed
LOC_Os09g38930OsAffx.18054.1.S1_at11/119+22354475..22356685expressed protein
LOC_Os09g38940OsAffx.18924.2.S1_x_at7/119+22358487..22360363hypothetical protein
LOC_Os09g38940OsAffx.19842.1.S1_at3/119+22358487..22360363hypothetical protein
LOC_Os09g38940OsAffx.18924.3.S1_at1/119+22358487..22360363hypothetical protein
LOC_Os09g38940OsAffx.19421.1.S1_at1/119+22358487..22360363hypothetical protein
LOC_Os09g38950Os.52564.1.S1_at6/119+22361130..22366210retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g38950Os.14444.1.S1_at1/119+22361130..22366210retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g38960Os.26972.1.S1_at11/119+22367307..22373131Potassium transporter 11, putative, expressed
LOC_Os09g38960OsAffx.18389.1.S1_at1/119+22367307..22373131Potassium transporter 11, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48092.1.A1_at--412--571Chr09:22344657..22344681 (25 bp)
ATCCACCATGCCAACCTTAAGAAAG
LOC_Os09g38900
Os.48092.1.A1_at--2--1191Chr09:22344680..22344704 (25 bp)
AGTATCCATCAACCGATTTTTCCCG
LOC_Os09g38900
Os.48092.1.A1_at--616--4231Chr09:22344692..22344716 (25 bp)
CCGATTTTTCCCGTCAAAGAGCTTG
LOC_Os09g38900
Os.48092.1.A1_at--975--51Chr09:22344738..22344762 (25 bp)
ATTGAGAATGCCTCGTCGCTACAAT
LOC_Os09g38900
Os.48092.1.A1_at--412--3731Chr09:22344756..22344780 (25 bp)
CTACAATGCCTTAAGCTGGACGCTG
LOC_Os09g38900
Os.48092.1.A1_at--135--5811Chr09:22344774..22344798 (25 bp)
GACGCTGGCTATGGTTTTGACACTA
LOC_Os09g38900
Os.48092.1.A1_at--457--2831Chr09:22344822..22344846 (25 bp)
AAGTTAGATGTACTCCATGCCCTCA
LOC_Os09g38900
Os.48092.1.A1_at--591--3531Chr09:22344837..22344861 (25 bp)
CATGCCCTCAGTGCTGTGGAGGTTG
LOC_Os09g38900
Os.48092.1.A1_at--176--8211Chr09:22344879..22344903 (25 bp)
GGCAAAGTTCCCTCCAGTGTGAAAT
LOC_Os09g38900
Os.48092.1.A1_at--507--2231Chr09:22344900..22344924 (25 bp)
AAATTCAACATTCTGGAGCCCTGCG
LOC_Os09g38900
Os.48092.1.A1_at--294--8091Chr09:22344914..22344938 (25 bp)
GGAGCCCTGCGAGCGGTGTCATATT
LOC_Os09g38900
Target Sequence 
ATCCACCATGCCAACCTTAAGAAAGTATCCATCAACCGATTTTTCCCGTCAAAGAGCTTGATTGAGCTAACATATCTAAT
TATTGAGAATGCCTCGTCGCTACAATGCCTTAAGCTGGACGCTGGCTATGGTTTTGACACTAGTGGCATGTGTAAAAGGA
TGAATAAGTTAGATGTACTCCATGCCCTCAGTGCTGTGGAGGTTGCCAAGAAATATATTGAGGGCAAAGTTCCCTCCAGT
GTGAAATTCAACATTCTGGAGCCCTGCGAGCGGTGTCATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48092.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis