Browse Element(s) Details


Os.54238.1.S1_at

Description gb:AK102702.1
DB_XREF= gi:32987911
TID=Os.54238.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54238 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033103N20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033103N20, full insert sequence.
FL= gb:AK102702.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3891011/11wall-associated kinase-like 1, putative, expressed
LOC_Os12g165201/11wall-associated kinase-like 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38870OsAffx.6521.1.S1_at11/119+22324708..22327628hypothetical protein
LOC_Os09g38880OsAffx.18053.1.S1_at11/119+22328946..22329182hypothetical protein
LOC_Os09g38890OsAffx.6522.1.S1_at11/119+22331328..22333002hypothetical protein
LOC_Os09g38890Os.49759.1.S1_x_at1/119+22331328..22333002hypothetical protein
LOC_Os09g38900Os.48092.1.A1_at11/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900Os.35344.18.S1_x_at10/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900Os.35344.3.S1_x_at9/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900OsAffx.22940.5.S1_x_at3/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900OsAffx.22940.5.S1_at2/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38910Os.54238.1.S1_at11/119+22348258..22350996wall-associated kinase-like 1, putative, expressed
LOC_Os09g38920Os.20853.1.S1_at11/119+22351167..22353066Papain family cysteine protease containing protein, expressed
LOC_Os09g38920OsAffx.22518.1.S1_x_at1/119+22351167..22353066Papain family cysteine protease containing protein, expressed
LOC_Os09g38930OsAffx.18054.1.S1_at11/119+22354475..22356685expressed protein
LOC_Os09g38940OsAffx.18924.2.S1_x_at7/119+22358487..22360363hypothetical protein
LOC_Os09g38940OsAffx.19842.1.S1_at3/119+22358487..22360363hypothetical protein
LOC_Os09g38940OsAffx.18924.3.S1_at1/119+22358487..22360363hypothetical protein
LOC_Os09g38940OsAffx.19421.1.S1_at1/119+22358487..22360363hypothetical protein
LOC_Os09g38950Os.52564.1.S1_at6/119+22361130..22366210retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g38950Os.14444.1.S1_at1/119+22361130..22366210retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g38960Os.26972.1.S1_at11/119+22367307..22373131Potassium transporter 11, putative, expressed
LOC_Os09g38960OsAffx.18389.1.S1_at1/119+22367307..22373131Potassium transporter 11, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009620biological_processresponse to fungi
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54238.1.S1_at--909--5371Chr09:22350485..22350509 (25 bp)
GAAGAAGCCATTTTCTCACCTGACA
LOC_Os09g38910
Os.54238.1.S1_at--481--2871Chr09:22350520..22350544 (25 bp)
AAGGTCTGGTTGCACATTTTGTCAC
LOC_Os09g38910
Os.54238.1.S1_at--1039--6611Chr09:22350567..22350591 (25 bp)
GTTGGAGTGTTAGACCTGCAAATCA
LOC_Os09g38910
Os.54238.1.S1_at--575--1571Chr09:22350626..22350650 (25 bp)
AGCTACGCTAGCTGTGACATGTGTA
LOC_Os09g38910
Os.54238.1.S1_at--591--8091Chr09:22350665..22350689 (25 bp)
GGACCGGCCTACCATGAGACAGGTT
LOC_Os09g38910
Os.54238.1.S1_at--246--9011Chr09:22350701..22350725 (25 bp)
TGAAGGCATTCAGGCATCCAGGGAA
LOC_Os09g38910
Os.54238.1.S1_at--130--751Chr09:22350727..22350751 (25 bp)
ATGTTTCAGGTAATCTTTCTGCAGA
LOC_Os09g38910
Os.54238.1.S1_at--490--8772Chr09:22350856..22350880 (25 bp)
TGTTGTCTTCAAGGTACCCTCGGTA
LOC_Os09g38910
Os.54238.1.S1_at--224--6951Chr09:22350878..22350902 (25 bp)
GTAGTTTTCTGGTCATCTGTGTTCA
LOC_Os09g38910
Os.54238.1.S1_at--1064--10511Chr09:22350915..22350939 (25 bp)
TTCAGTTTCATTTTTCCCCAAGGAG
LOC_Os09g38910
Os.54238.1.S1_at--511--10271Chr09:22350927..22350951 (25 bp)
TTTCCCCAAGGAGTTTATGTGTTCT
LOC_Os09g38910
Target Sequence 
GAAGAAGCCATTTTCTCACCTGACACCTGAGGGTGAAGGTCTGGTTGCACATTTTGTCACTTCATTTACAGAAGGCAATC
TAGTTGGAGTGTTAGACCTGCAAATCATGGAGGAGGCAGACATGAAAGTTGTCGAAGTAGTAGCTACGCTAGCTGTGACA
TGTGTAAATCTGAGAGGAGAGGACCGGCCTACCATGAGACAGGTTGAGATGGCACTTGAAGGCATTCAGGCATCCAGGGA
AAATGTTTCAGGTAATCTTTCTGCAGAGAAGCTTGGAGAGAGCAATAATGTCGCGAGGGATTTCATGCCAAGCCAAGAAG
GAAGAAGCATGACAGAAGGGACTAGGCAATATAGTTTGGAAGAAGAGTTCTTGTTGTCTTCAAGGTACCCTCGGTAGTTT
TCTGGTCATCTGTGTTCATGTAAAGCTGATTTCAGTTTCATTTTTCCCCAAGGAGTTTATGTGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis