Browse Element(s) Details


OsAffx.22518.1.S1_x_at

Description gb:NM_186154.1
DB_XREF= gi:34899393
GEN=P0585H11.19
TID=OsAffx.22518.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative cysteine proteinase (P0585H11.19), mRNA.
PROD=putative cysteine proteinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0180011/11Papain family cysteine protease containing protein
LOC_Os09g389201/11Papain family cysteine protease containing protein, expressed
LOC_Os07g297601/11Cysteine proteinase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01740Os.44564.1.S1_at11/117+436501..438003expressed protein
LOC_Os07g01740OsAffx.16034.1.S1_at10/117+436501..438003expressed protein
LOC_Os07g01750OsAffx.22519.1.S1_at11/117+438728..443413MATE efflux family protein, expressed
LOC_Os07g01760Os.11824.1.S1_a_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01760Os.11824.1.S1_x_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01770Os.33732.3.S1_x_at11/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01770Os.33732.1.S1_at10/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01780Os.33732.2.S1_at9/117+456037..458517expressed protein
LOC_Os07g01790OsAffx.17581.1.S1_at11/117+461196..461405hypothetical protein
LOC_Os07g01800OsAffx.22518.1.S1_at11/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01800OsAffx.22518.1.S1_x_at11/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01800Os.20514.1.S1_x_at1/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01810Os.29959.1.S1_at11/117+465585..467052calcium-activated outward-rectifying potassium channel 6, putative, expressed
LOC_Os07g01820Os.12750.1.S1_x_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.12750.2.S1_s_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.12750.1.S1_a_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.57543.1.S1_at2/117+469473..475954MADS2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0007568biological_processaging
GO:0009269biological_processresponse to desiccation
GO:0009414biological_processresponse to water deprivation
GO:0009651biological_processresponse to salt stress
GO:0009723biological_processresponse to ethylene stimulus
GO:0010150biological_processleaf senescence
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22518.1.S1_x_at--556--1711Chr07:463086..463110 (25 bp)
ACCACCGGCGAGCTGGTGTCCCTGT
LOC_Os07g01800
OsAffx.22518.1.S1_x_at--168--3791Chr07:463164..463188 (25 bp)
CTCGACAATGCGTTCCAGTACATGG
LOC_Os07g01800
OsAffx.22518.1.S1_x_at--295--3031Chr07:463170..463194 (25 bp)
AATGCGTTCCAGTACATGGCCAACA
LOC_Os07g01800
OsAffx.22518.1.S1_x_at--768--4031Chr07:463174..463198 (25 bp)
CGTTCCAGTACATGGCCAACAGCGG
LOC_Os07g01800
OsAffx.22518.1.S1_x_at--466--7571Chr07:463243..463267 (25 bp)
GGGCGTGCCAGTTCGACGCCTCGTC
LOC_Os07g01800
OsAffx.22518.1.S1_x_at--1060--391Chr07:463293..463317 (25 bp)
ATCAGCGGCTACCAGCGCGTGAACC
LOC_Os07g01800
OsAffx.22518.1.S1_x_at--180--8091Chr07:463381..463405 (25 bp)
GGAGCGGCGCCATGTTCCGGCACTA
LOC_Os07g01800
OsAffx.22518.1.S1_x_at--19--4431Chr07:463389..463413 (25 bp)
GCCATGTTCCGGCACTACGGCAGCG
LOC_Os07g01800
OsAffx.22518.1.S1_x_at--113--7431Chr07:463416..463440 (25 bp)
GTGTTCACGGCGGACAGCTGCGGGA
LOC_Os07g01800
OsAffx.22518.1.S1_x_at--447--8111Chr07:463438..463462 (25 bp)
GGACGAAGCTGGACCACGCGGTGGC
LOC_Os07g01800
OsAffx.22518.1.S1_x_at--640--8353Chr07:463500..463524 (25 bp)
GGCGGCGGCTACTGGATCATCAAGA
LOC_Os07g01800
Target Sequence 
ACCACCGGCGAGCTGGTGTCCCTGTCGGAGCAGCAGCTGCTCGACTGCGCCGACAACGGCGGCTGCACCGGCGGTAGCCT
CGACAATGCGTTCCAGTACATGGCCAACAGCGGCGGCGTCACCACCGAGGCGGCCTACGCCTACCAGGGCGCGCAGGGGG
CGTGCCAGTTCGACGCCTCGTCGTCGGCGTCGGGCGTCGCCGCCACCATCAGCGGCTACCAGCGCGTGAACCCCAACGAC
GAGGGGTCGCTGGCCGCCGCCGTGGCGAGCCAGCCGGTGTCGGTGGCCATCGAGGGGAGCGGCGCCATGTTCCGGCACTA
CGGCAGCGGGGTGTTCACGGCGGACAGCTGCGGGACGAAGCTGGACCACGCGGTGGCGGTGGTGGGGTACGGCGCGGAGG
CGGACGGGAGCGGCGGCGGCGGCTACTGGATCATCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22518.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis