Browse Element(s) Details


Os.33732.3.S1_x_at

Description gb:CB097081
DB_XREF= gi:27921273
DB_XREF=AF53-Rpf_12_A14_T7_049.ab1
CLONE=C0004238
TID=Os.33732.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33732 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative chitinase III (P0585H11.18), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0177011/11C2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01710Os.11806.1.S1_at11/117+423271..426822Leucine Rich Repeat family protein, expressed
LOC_Os07g01710Os.11806.2.S1_x_at11/117+423271..426822Leucine Rich Repeat family protein, expressed
LOC_Os07g01720Os.19340.1.S1_at11/117+427110..429906expressed protein
LOC_Os07g01730Os.27845.1.S1_x_at11/117+430383..435851expressed protein
LOC_Os07g01740Os.44564.1.S1_at11/117+436501..438003expressed protein
LOC_Os07g01740OsAffx.16034.1.S1_at10/117+436501..438003expressed protein
LOC_Os07g01750OsAffx.22519.1.S1_at11/117+438728..443413MATE efflux family protein, expressed
LOC_Os07g01760Os.11824.1.S1_a_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01760Os.11824.1.S1_x_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01770Os.33732.3.S1_x_at11/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01770Os.33732.1.S1_at10/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01780Os.33732.2.S1_at9/117+456037..458517expressed protein
LOC_Os07g01790OsAffx.17581.1.S1_at11/117+461196..461405hypothetical protein
LOC_Os07g01800OsAffx.22518.1.S1_at11/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01800OsAffx.22518.1.S1_x_at11/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01800Os.20514.1.S1_x_at1/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01810Os.29959.1.S1_at11/117+465585..467052calcium-activated outward-rectifying potassium channel 6, putative, expressed
LOC_Os07g01820Os.12750.1.S1_x_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.12750.2.S1_s_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.12750.1.S1_a_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.57543.1.S1_at2/117+469473..475954MADS2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33732.3.S1_x_at--577--9611Chr07:450804..450828 (25 bp)
TCATGAACCCTATTGCACCGATTAA
LOC_Os07g01770
Os.33732.3.S1_x_at--519--5631Chr07:450637..450661 (25 bp)
GACACTTTCAGTAGAGACGACCCAA
LOC_Os07g01770
Os.33732.3.S1_x_at--118--9031Chr07:450605..450629 (25 bp)
TGCAGAAATAGACCTGGAGCCCTTC
LOC_Os07g01770
Os.33732.3.S1_x_at--191--5331Chr07:450577..450601 (25 bp)
GAAGTTCTGAACATGGACCCGGAGA
LOC_Os07g01770
Os.33732.3.S1_x_at--779--2411Chr07:450530..450554 (25 bp)
AAAAACAATTCGACCATCCAACCAG
LOC_Os07g01770
Os.33732.3.S1_x_at--461--5471Chr07:450506..450530 (25 bp)
GAACTGCCTTGCTGATGAGAGTCAC
LOC_Os07g01770
Os.33732.3.S1_x_at--743--8891Chr07:450491..450515 (25 bp)
TGAGAGTCACCTATTCTGGAGGAAT
LOC_Os07g01770
Os.33732.3.S1_x_at--441--7271Chr07:450457..450481 (25 bp)
GTCCAGGACATTATTCTCCGACTTA
LOC_Os07g01770
Os.33732.3.S1_x_at--788--2371Chr07:450431..450455 (25 bp)
AAACGTCGAGAGTGGTGAGCTGCAA
LOC_Os07g01770
Os.33732.3.S1_x_at--171--5111Chr07:450374..450398 (25 bp)
GCACTAAGTGTCTCATGGCCATTGG
LOC_Os07g01770
Os.33732.3.S1_x_at--157--5111Chr07:450203..450227 (25 bp)
GCAAAGGGTTCATCAGGTTAGTCAA
LOC_Os07g01770
Target Sequence 
TCATGAACCCTATTGCACCGATTAAGCTTGGGGTGTTTGACAAAGACACTTTCAGTAGAGACGACCCAATGGGAGATGCA
GAAATAGACCTGGAGCCCTTCATGGAAGTTCTGAACATGGACCCGGAGAACATTCGGAATGGTTCCATCATAAAAACAAT
TCGACCATCCAACCAGAACTGCCTTGCTGATGAGAGTCACCTATTCTGGAGGAATGGTAAATTTGTCCAGGACATTATTC
TCCGACTTAGAAACGTCGAGAGTGGTGAGCTGCAAGTGCAACTGCAATGGGTGAAAATTCCTGGCAGGCACTAAGTGTCT
CATGGCCATTGGGAGATCTTGGCTACTGAGATATCATTGACATTTCCGAATGCCAAAACATATATTGTGCGAAATGGATC
ATGTCAACCATTGGGGCTGTAAATACTGTGCAAAAAATGAATCATGTCAAGCACGTTTTGATGTGGAGGTTGTGACCAGC
AAAGGGTTCATCAGGTTAGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33732.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis