Browse Element(s) Details


Os.11806.1.S1_at

Description gb:AK064359.1
DB_XREF= gi:32974377
TID=Os.11806.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11806 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU056601(S20723),AU056602(S20723)~receptor protein kinase-like protein (P0585H11.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-B08, full insert sequence.
FL= gb:AK064359.1 gb:AK103166.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0171011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01660Os.7499.1.S1_at11/117+402852..403921Dirigent-like protein, expressed
LOC_Os07g01670OsAffx.16032.1.S1_at11/117+405686..405889hypothetical protein
LOC_Os07g01680OsAffx.16033.1.S1_at11/117+411226..411888Dirigent-like protein
LOC_Os07g01690NANA7+413199..413553hypothetical protein
LOC_Os07g01700OsAffx.28224.1.S1_at11/117+417244..417748hypothetical protein
LOC_Os07g01710Os.11806.1.S1_at11/117+423271..426822Leucine Rich Repeat family protein, expressed
LOC_Os07g01710Os.11806.2.S1_x_at11/117+423271..426822Leucine Rich Repeat family protein, expressed
LOC_Os07g01720Os.19340.1.S1_at11/117+427110..429906expressed protein
LOC_Os07g01730Os.27845.1.S1_x_at11/117+430383..435851expressed protein
LOC_Os07g01740Os.44564.1.S1_at11/117+436501..438003expressed protein
LOC_Os07g01740OsAffx.16034.1.S1_at10/117+436501..438003expressed protein
LOC_Os07g01750OsAffx.22519.1.S1_at11/117+438728..443413MATE efflux family protein, expressed
LOC_Os07g01760Os.11824.1.S1_a_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01760Os.11824.1.S1_x_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01770Os.33732.3.S1_x_at11/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01770Os.33732.1.S1_at10/117+450047..452356C2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009556biological_processmicrosporogenesis
GO:0010234biological_processtapetal cell fate specification
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11806.1.S1_at--135--3071Chr07:426658..426682 (25 bp)
AATCAAGAATTGAGTACCTAGTACT
LOC_Os07g01710
Os.11806.1.S1_at--644--9891Chr07:426679..426703 (25 bp)
TACTATGTGGCATTCCAGTGCTATA
LOC_Os07g01710
Os.11806.1.S1_at--630--7531Chr07:426685..426709 (25 bp)
GTGGCATTCCAGTGCTATATCTTGG
LOC_Os07g01710
Os.11806.1.S1_at--148--91Chr07:426690..426714 (25 bp)
ATTCCAGTGCTATATCTTGGAGATA
LOC_Os07g01710
Os.11806.1.S1_at--6--1271Chr07:426710..426734 (25 bp)
AGATAAGTGGTGGTTTGTGATGAAA
LOC_Os07g01710
Os.11806.1.S1_at--561--8791Chr07:426743..426767 (25 bp)
TGTTCTTGTAATTTGTCCTGCGAAA
LOC_Os07g01710
Os.11806.1.S1_at--190--10791Chr07:426748..426772 (25 bp)
TTGTAATTTGTCCTGCGAAAACTGA
LOC_Os07g01710
Os.11806.1.S1_at--668--4591Chr07:426762..426786 (25 bp)
GCGAAAACTGAAATTCTGGCAGCTT
LOC_Os07g01710
Os.11806.1.S1_at--287--3151Chr07:426773..426797 (25 bp)
AATTCTGGCAGCTTATGGTACAGGG
LOC_Os07g01710
Os.11806.1.S1_at--865--7691Chr07:426796..426820 (25 bp)
GGGTACATCATCACAGATTTCTTAT
LOC_Os07g01710
Os.11806.1.S1_at--284--7031Chr07:426798..426822 (25 bp)
GTACATCATCACAGATTTCTTATGC
LOC_Os07g01710
Target Sequence 
AATCAAGAATTGAGTACCTAGTACTATGTGGCATTCCAGTGCTATATCTTGGAGATAAGTGGTGGTTTGTGATGAAATGT
AGTAATGTTCTTGTAATTTGTCCTGCGAAAACTGAAATTCTGGCAGCTTATGGTACAGGGGTACATCATCACAGATTTCT
TATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11806.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis