Browse Element(s) Details


OsAffx.28224.1.S1_at

Description tigr:9635.m00072
TID=OsAffx.28224.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0170011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01650NANA7+389938..395275transposon protein, putative, unclassified
LOC_Os07g01660Os.7499.1.S1_at11/117+402852..403921Dirigent-like protein, expressed
LOC_Os07g01670OsAffx.16032.1.S1_at11/117+405686..405889hypothetical protein
LOC_Os07g01680OsAffx.16033.1.S1_at11/117+411226..411888Dirigent-like protein
LOC_Os07g01690NANA7+413199..413553hypothetical protein
LOC_Os07g01700OsAffx.28224.1.S1_at11/117+417244..417748hypothetical protein
LOC_Os07g01710Os.11806.1.S1_at11/117+423271..426822Leucine Rich Repeat family protein, expressed
LOC_Os07g01710Os.11806.2.S1_x_at11/117+423271..426822Leucine Rich Repeat family protein, expressed
LOC_Os07g01720Os.19340.1.S1_at11/117+427110..429906expressed protein
LOC_Os07g01730Os.27845.1.S1_x_at11/117+430383..435851expressed protein
LOC_Os07g01740Os.44564.1.S1_at11/117+436501..438003expressed protein
LOC_Os07g01740OsAffx.16034.1.S1_at10/117+436501..438003expressed protein
LOC_Os07g01750OsAffx.22519.1.S1_at11/117+438728..443413MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28224.1.S1_at--215--8831Chr07:417687..417711 (25 bp)
TGATTGTCTCGGCATCATCATCTGC
LOC_Os07g01700
OsAffx.28224.1.S1_at--967--3771Chr07:417680..417704 (25 bp)
CTCGGCATCATCATCTGCTACAATG
LOC_Os07g01700
OsAffx.28224.1.S1_at--145--9091Chr07:417665..417689 (25 bp)
TGCTACAATGATCGTCATCTCTCCC
LOC_Os07g01700
OsAffx.28224.1.S1_at--306--9511Chr07:417649..417670 (22 bp)
TCTCCCTCTAATTCTTCTTCAGCAG
LOC_Os07g01700
OsAffx.28224.1.S1_at--312--951Chr07:417378..417402 (25 bp)
AGGAAGCTGTGCACCAAGCGTGGAA
LOC_Os07g01700
OsAffx.28224.1.S1_at--1126--3231Chr07:417364..417388 (25 bp)
CAAGCGTGGAACCTGCCGCGCCGAA
LOC_Os07g01700
OsAffx.28224.1.S1_at--400--9091Chr07:417351..417375 (25 bp)
TGCCGCGCCGAAGGTTTCGACTACG
LOC_Os07g01700
OsAffx.28224.1.S1_at--164--2911Chr07:417341..417365 (25 bp)
AAGGTTTCGACTACGGCTCCTGCTA
LOC_Os07g01700
OsAffx.28224.1.S1_at--200--3051Chr07:417312..417336 (25 bp)
AATCGACCACGACCTTCTTTCATCG
LOC_Os07g01700
OsAffx.28224.1.S1_at--1121--1731Chr07:417301..417325 (25 bp)
ACCTTCTTTCATCGGCAGATTCTTT
LOC_Os07g01700
OsAffx.28224.1.S1_at--927--1251Chr07:417285..417309 (25 bp)
AGATTCTTTCACGTCTGCTACTGCA
LOC_Os07g01700
Target Sequence 
TGATTGTCTCGGCATCATCATCTGCTACAATGATCGTCATCTCTCCCTCTAATTCTTCTTCAGCAGCAGCAGCAGCAGGA
AGAGGAAGAAGAATGGAGGAGTATGGTAGTGGTGGGTGCAGTGTGAAGAGCAAGACGTGGAATGAGAGGAAGCTGTGCAC
CAAGCGTGGAACCTGCCGCGCCGAAGGTTTCGACTACGGCTCCTGCTACCCCAATCGACCACGACCTTCTTTCATCGGCA
GATTCTTTCACGTCTGCTACTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28224.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis