Browse Element(s) Details


OsAffx.16034.1.S1_at

Description tigr:9635.m00076
TID=OsAffx.16034.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0174010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01680OsAffx.16033.1.S1_at11/117+411226..411888Dirigent-like protein
LOC_Os07g01690NANA7+413199..413553hypothetical protein
LOC_Os07g01700OsAffx.28224.1.S1_at11/117+417244..417748hypothetical protein
LOC_Os07g01710Os.11806.1.S1_at11/117+423271..426822Leucine Rich Repeat family protein, expressed
LOC_Os07g01710Os.11806.2.S1_x_at11/117+423271..426822Leucine Rich Repeat family protein, expressed
LOC_Os07g01720Os.19340.1.S1_at11/117+427110..429906expressed protein
LOC_Os07g01730Os.27845.1.S1_x_at11/117+430383..435851expressed protein
LOC_Os07g01740Os.44564.1.S1_at11/117+436501..438003expressed protein
LOC_Os07g01740OsAffx.16034.1.S1_at10/117+436501..438003expressed protein
LOC_Os07g01750OsAffx.22519.1.S1_at11/117+438728..443413MATE efflux family protein, expressed
LOC_Os07g01760Os.11824.1.S1_a_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01760Os.11824.1.S1_x_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01770Os.33732.3.S1_x_at11/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01770Os.33732.1.S1_at10/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01780Os.33732.2.S1_at9/117+456037..458517expressed protein
LOC_Os07g01790OsAffx.17581.1.S1_at11/117+461196..461405hypothetical protein
LOC_Os07g01800OsAffx.22518.1.S1_at11/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01800OsAffx.22518.1.S1_x_at11/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01800Os.20514.1.S1_x_at1/117+462657..463640Papain family cysteine protease containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16034.1.S1_at--453--5051Chr07:436646..436667 (22 bp)
GCAGCAAGTCATCTTCTTCATGGCC
LOC_Os07g01740
OsAffx.16034.1.S1_at--431--2851Chr07:436651..436803 (25 bp)
AAGTCATCTTCTTCATGGCCTTGCT
LOC_Os07g01740
OsAffx.16034.1.S1_at--76--8451Chr07:436795..436818 (24 bp)
TGGCCTTGCTCACCATGTCGGAAGA
LOC_Os07g01740
OsAffx.16034.1.S1_at--482--9091Chr07:436800..436824 (25 bp)
TGCTCACCATGTCGGAAGATCCAAT
LOC_Os07g01740
OsAffx.16034.1.S1_at--795--5351Chr07:436814..436838 (25 bp)
GAAGATCCAATACCACGAGGCTCCA
LOC_Os07g01740
OsAffx.16034.1.S1_at--234--3091Chr07:436822..436846 (25 bp)
AATACCACGAGGCTCCAGGGCTCCT
LOC_Os07g01740
OsAffx.16034.1.S1_at--82--4351NONE
CCAGGGCTCCTCTCTCAGGGTGCTG
NONE
OsAffx.16034.1.S1_at--618--9691Chr07:437424..437448 (25 bp)
TCAAATTATTATTAAGGCCTCGTAA
LOC_Os07g01740
OsAffx.16034.1.S1_at--655--10491Chr07:437435..437459 (25 bp)
TTAAGGCCTCGTAACAACACCATGG
LOC_Os07g01740
OsAffx.16034.1.S1_at--400--9811Chr07:437446..437470 (25 bp)
TAACAACACCATGGCAGCAGTGTCT
LOC_Os07g01740
OsAffx.16034.1.S1_at--653--2731Chr07:437520..437637 (25 bp)
AAGAACCACAACCACTACCTAAGCT
LOC_Os07g01740
Target Sequence 
GCAGCAAGTCATCTTCTTCATGGCCTTGCTCACCATGTCGGAAGATCCAATACCACGAGGCTCCAGGGCTCCTCTCTCAG
GGTGCTGTCAGGGGGACTTGAACTCAAATTATTATTAAGGCCTCGTAACAACACCATGGCAGCAGTGTCTATAGGACCTG
CATTGCTTGGATATCAGCGGTATGCCACAAACATTGCAGAAGAACCACAACCACTACCTAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16034.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis