Browse Element(s) Details


Os.11824.1.S1_a_at

Description gb:AK060835.1
DB_XREF= gi:32970853
TID=Os.11824.1
CNT=164
FEA=FLmRNA
TIER=FL+Stack
STK=15
UG=Os.11824 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative alanine aminotransferase (P0585H11.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C09, full insert sequence.
FL= gb:AY236227.1 gb:AK060835.1 gb:AK067732.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0176011/11Alanine aminotransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01710Os.11806.1.S1_at11/117+423271..426822Leucine Rich Repeat family protein, expressed
LOC_Os07g01710Os.11806.2.S1_x_at11/117+423271..426822Leucine Rich Repeat family protein, expressed
LOC_Os07g01720Os.19340.1.S1_at11/117+427110..429906expressed protein
LOC_Os07g01730Os.27845.1.S1_x_at11/117+430383..435851expressed protein
LOC_Os07g01740Os.44564.1.S1_at11/117+436501..438003expressed protein
LOC_Os07g01740OsAffx.16034.1.S1_at10/117+436501..438003expressed protein
LOC_Os07g01750OsAffx.22519.1.S1_at11/117+438728..443413MATE efflux family protein, expressed
LOC_Os07g01760Os.11824.1.S1_a_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01760Os.11824.1.S1_x_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01770Os.33732.3.S1_x_at11/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01770Os.33732.1.S1_at10/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01780Os.33732.2.S1_at9/117+456037..458517expressed protein
LOC_Os07g01790OsAffx.17581.1.S1_at11/117+461196..461405hypothetical protein
LOC_Os07g01800OsAffx.22518.1.S1_at11/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01800OsAffx.22518.1.S1_x_at11/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01800Os.20514.1.S1_x_at1/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01810Os.29959.1.S1_at11/117+465585..467052calcium-activated outward-rectifying potassium channel 6, putative, expressed
LOC_Os07g01820Os.12750.1.S1_x_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.12750.2.S1_s_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.12750.1.S1_a_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.57543.1.S1_at2/117+469473..475954MADS2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009853biological_processphotorespiration
GO:0005777cellular_componentperoxisome
GO:0004021molecular_functionalanine transaminase activity
GO:0047958molecular_functionglycine transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11824.1.S1_a_at--850--10571Chr07:445374..445398 (25 bp)
TTCTACTGCCTCAAGCTTCTTGAAG
LOC_Os07g01760
Os.11824.1.S1_a_at--886--9911Chr07:445371..445395 (25 bp)
TACTGCCTCAAGCTTCTTGAAGCAA
LOC_Os07g01760
Os.11824.1.S1_a_at--961--9171Chr07:445368..445392 (25 bp)
TGCCTCAAGCTTCTTGAAGCAACTG
LOC_Os07g01760
Os.11824.1.S1_a_at--369--1471Chr07:445361..445385 (25 bp)
AGCTTCTTGAAGCAACTGGAATATC
LOC_Os07g01760
Os.11824.1.S1_a_at--47--5391Chr07:445353..445377 (25 bp)
GAAGCAACTGGAATATCCACTGTTC
LOC_Os07g01760
Os.11824.1.S1_a_at--604--1491Chr07:445351..445375 (25 bp)
AGCAACTGGAATATCCACTGTTCCA
LOC_Os07g01760
Os.11824.1.S1_a_at--201--2571Chr07:445348..445372 (25 bp)
AACTGGAATATCCACTGTTCCAGGG
LOC_Os07g01760
Os.11824.1.S1_a_at--305--8971Chr07:444891..444915 (25 bp)
TGAAAACAAGATGAGCACTACCCCA
LOC_Os07g01760
Os.11824.1.S1_a_at--460--9591Chr07:444716..444740 (25 bp)
TCTTGTCCTTGATATGCATGATGTA
LOC_Os07g01760
Os.11824.1.S1_a_at--1130--10811Chr07:444714..444738 (25 bp)
TTGTCCTTGATATGCATGATGTATA
LOC_Os07g01760
Os.11824.1.S1_a_at--391--7271Chr07:444712..444736 (25 bp)
GTCCTTGATATGCATGATGTATAGA
LOC_Os07g01760
Target Sequence 
TTCTACTGCCTCAAGCTTCTTGAAGCAACTGGAATATCCACTGTTCCAGGGTCAGGTTTCGGACAAAAAGAAGGGGTGTT
CCACCTGAGGACGACCATCCTGCCAGCTGAGGAGGACATGCCTGCCATCATGACCAGCTTCAAGAAGTTCAACGACACTT
TCATGGATCAGTACGATGGCTACTCCAGGATGTGAAATGAAAACAAGATGAGCACTACCCCAGGAGAAGAGAGAAAGAAT
CTGCCTCAACGCNGTGGCTGATCGAGCAGTTATAATTAAAAGGCACTGTTAATTAATTAATTAATCAATCAATCGAAAGG
CTAATTATTTGCTGCAACAATCTGTAACTCGATCTACTGAAGGAAAAAAAAAACTTCTTGTCCTTGATATGCATGATGTA
TAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11824.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis