Browse Element(s) Details


OsAffx.22519.1.S1_at

Description tigr:9635.m00077
TID=OsAffx.22519.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0175011/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01700OsAffx.28224.1.S1_at11/117+417244..417748hypothetical protein
LOC_Os07g01710Os.11806.1.S1_at11/117+423271..426822Leucine Rich Repeat family protein, expressed
LOC_Os07g01710Os.11806.2.S1_x_at11/117+423271..426822Leucine Rich Repeat family protein, expressed
LOC_Os07g01720Os.19340.1.S1_at11/117+427110..429906expressed protein
LOC_Os07g01730Os.27845.1.S1_x_at11/117+430383..435851expressed protein
LOC_Os07g01740Os.44564.1.S1_at11/117+436501..438003expressed protein
LOC_Os07g01740OsAffx.16034.1.S1_at10/117+436501..438003expressed protein
LOC_Os07g01750OsAffx.22519.1.S1_at11/117+438728..443413MATE efflux family protein, expressed
LOC_Os07g01760Os.11824.1.S1_a_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01760Os.11824.1.S1_x_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01770Os.33732.3.S1_x_at11/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01770Os.33732.1.S1_at10/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01780Os.33732.2.S1_at9/117+456037..458517expressed protein
LOC_Os07g01790OsAffx.17581.1.S1_at11/117+461196..461405hypothetical protein
LOC_Os07g01800OsAffx.22518.1.S1_at11/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01800OsAffx.22518.1.S1_x_at11/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01800Os.20514.1.S1_x_at1/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01810Os.29959.1.S1_at11/117+465585..467052calcium-activated outward-rectifying potassium channel 6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009636biological_processresponse to toxin
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22519.1.S1_at--822--9671Chr07:439622..439646 (25 bp)
TCACCTATGGGTTTGCTGCTGCTAT
LOC_Os07g01750
OsAffx.22519.1.S1_at--395--4731Chr07:439432..439456 (25 bp)
GCTGGGAGTGGCATTTCTTCTGCTC
LOC_Os07g01750
OsAffx.22519.1.S1_at--804--10831Chr07:439400..439424 (25 bp)
TTGGTCATGATCTCTGGGCAGGGCT
LOC_Os07g01750
OsAffx.22519.1.S1_at--515--3151Chr07:439346..439370 (25 bp)
AATTCGCTTCGATGACTCCGTTGCT
LOC_Os07g01750
OsAffx.22519.1.S1_at--72--7831Chr07:439316..439340 (25 bp)
GGTCAGTGGTGCTGGACTCTACACA
LOC_Os07g01750
OsAffx.22519.1.S1_at--716--831Chr07:439123..439147 (25 bp)
ATGGACCAACCTGGTGGCATTCTAC
LOC_Os07g01750
OsAffx.22519.1.S1_at--212--8291Chr07:439108..439132 (25 bp)
GGCATTCTACATTGTTGGCTTACCA
LOC_Os07g01750
OsAffx.22519.1.S1_at--744--10451Chr07:439089..439113 (25 bp)
TTACCACTTTCTATCCTCTTTGGAT
LOC_Os07g01750
OsAffx.22519.1.S1_at--580--7931Chr07:439068..439092 (25 bp)
GGATTTAAGCTTGGCCTTCAGACCA
LOC_Os07g01750
OsAffx.22519.1.S1_at--627--5731Chr07:438810..438834 (25 bp)
GACGGTTTTGTCTGTTGAGGCTTGA
LOC_Os07g01750
OsAffx.22519.1.S1_at--1037--2511Chr07:438777..438801 (25 bp)
AACTTACCAGTTTAGCAGCAGCATA
LOC_Os07g01750
Target Sequence 
TCACCTATGGGTTTGCTGCTGCTATCAGCACAAGGGTGTCAAATGAGCTTGGAGCTGGTAACGTTGCGAAGGCGAAGAAG
GCGCTTGCTGTGACGCTGGTGCTCTCCCTGCTGCTGGGAGTGGCATTTCTTCTGCTCCTAGGCCTTGGTCATGATCTCTG
GGCAGGGCTGTTCAGCAAAAGTGATGCAGTTATAAGCGAATTCGCTTCGATGACTCCGTTGCTCATCGGGTCAGTGGTGC
TGGACTCTACACAGGGAGTCTTGTCAGGGGTTTCAAGAGGCTGTGGTTGGCAGCACTTGGCAGCATGGACCAACCTGGTG
GCATTCTACATTGTTGGCTTACCACTTTCTATCCTCTTTGGATTTAAGCTTGGCCTTCAGACCAAGGACCAAATGGGAAA
GATTAGAGCTGACAATGAACGGCAAAGAAGACGGTTTTGTCTGTTGAGGCTTGAAAGATCTGAACTTACCAGTTTAGCAG
CAGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22519.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis