Browse Element(s) Details


Os.19340.1.S1_at

Description gb:AK073520.1
DB_XREF= gi:32983543
TID=Os.19340.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19340 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 5, At5g53930 (P0585H11.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042E18, full insert sequence.
FL= gb:AK073651.1 gb:AK073520.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0172011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01660Os.7499.1.S1_at11/117+402852..403921Dirigent-like protein, expressed
LOC_Os07g01670OsAffx.16032.1.S1_at11/117+405686..405889hypothetical protein
LOC_Os07g01680OsAffx.16033.1.S1_at11/117+411226..411888Dirigent-like protein
LOC_Os07g01690NANA7+413199..413553hypothetical protein
LOC_Os07g01700OsAffx.28224.1.S1_at11/117+417244..417748hypothetical protein
LOC_Os07g01710Os.11806.1.S1_at11/117+423271..426822Leucine Rich Repeat family protein, expressed
LOC_Os07g01710Os.11806.2.S1_x_at11/117+423271..426822Leucine Rich Repeat family protein, expressed
LOC_Os07g01720Os.19340.1.S1_at11/117+427110..429906expressed protein
LOC_Os07g01730Os.27845.1.S1_x_at11/117+430383..435851expressed protein
LOC_Os07g01740Os.44564.1.S1_at11/117+436501..438003expressed protein
LOC_Os07g01740OsAffx.16034.1.S1_at10/117+436501..438003expressed protein
LOC_Os07g01750OsAffx.22519.1.S1_at11/117+438728..443413MATE efflux family protein, expressed
LOC_Os07g01760Os.11824.1.S1_a_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01760Os.11824.1.S1_x_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01770Os.33732.3.S1_x_at11/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01770Os.33732.1.S1_at10/117+450047..452356C2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19340.1.S1_at--777--5331Chr07:429226..429250 (25 bp)
GAAGTCAGGCATCCTCCTATTGATA
LOC_Os07g01720
Os.19340.1.S1_at--230--2711Chr07:429296..429320 (25 bp)
AAGCTTCAGCTCCTAATGTTTCTAC
LOC_Os07g01720
Os.19340.1.S1_at--798--7311Chr07:429506..429526 (21 bp)
GTGCAGGTCAGTTACAAAGTCTACA
LOC_Os07g01720
Os.19340.1.S1_at--351--4851Chr07:429561..429585 (25 bp)
GCTACAGCGCTGAAGTTGCCAAGAT
LOC_Os07g01720
Os.19340.1.S1_at--765--211Chr07:429604..429628 (25 bp)
ATTTGTCTTGTCTACACCTTAGTTA
LOC_Os07g01720
Os.19340.1.S1_at--758--231Chr07:429638..429662 (25 bp)
ATATACTTTTACTCTCTGCTGCCAT
LOC_Os07g01720
Os.19340.1.S1_at--602--10211Chr07:429664..429688 (25 bp)
TATTGACAATACATGCCTTCCGGAA
LOC_Os07g01720
Os.19340.1.S1_at--840--2071Chr07:429800..429824 (25 bp)
ACATTTTGACTGTAACTCGCTCCGA
LOC_Os07g01720
Os.19340.1.S1_at--865--3791Chr07:429815..429839 (25 bp)
CTCGCTCCGAATTCTGACACAGTGT
LOC_Os07g01720
Os.19340.1.S1_at--23--7431Chr07:429836..429860 (25 bp)
GTGTATGGGCAGCTACTGTTGTCAT
LOC_Os07g01720
Os.19340.1.S1_at--298--6631Chr07:429853..429877 (25 bp)
GTTGTCATGGCCTGCAGTGAACTAT
LOC_Os07g01720
Target Sequence 
GAAGTCAGGCATCCTCCTATTGATACTAACAAAATTGAAGGAACTAAAGGGGATGAAAGAAATTCAGGTGAAGCTTCAGC
TCCTAATGTTTCTACTTTGTCAACTGGTGAGGTCAAGGATCAGCCTGGGACTGAGGTCAAAGATGGTTCTCAGTTTGAGA
AAAAGACATTCTCTAGAATGCATGAGGGAGAAACTGTGCAGGTCAGTTACAAAGTCTACATACCAAAGAAAAGTCCAGCA
CTTGCAAGGAGGAAGCTACAGCGCTGAAGTTGCCAAGATTGTCACCAAATTCTCATTATTTGTCTTGTCTACACCTTAGT
TATGTAGCTGGATATACTTTTACTCTCTGCTGCCATGTATTGACAATACATGCCTTCCGGAAATCATTCCCACATCAAAA
TTGCTCATATTTCAGTTTTGATGCTCGATAGCTCAGATAGAAGCCTGGATAGTCAAAACATGTCATAGTTGTTTCTTTTT
TACTGCAAAATGAACATTTTGACTGTAACTCGCTCCGAATTCTGACACAGTGTATGGGCAGCTACTGTTGTCATGGCCTG
CAGTGAACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis