Browse Element(s) Details


OsAffx.16033.1.S1_at

Description tigr:9635.m00070
TID=OsAffx.16033.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0168011/11Dirigent-like protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01640NANA7+386259..389308retrotransposon protein, putative, unclassified
LOC_Os07g01650NANA7+389938..395275transposon protein, putative, unclassified
LOC_Os07g01660Os.7499.1.S1_at11/117+402852..403921Dirigent-like protein, expressed
LOC_Os07g01670OsAffx.16032.1.S1_at11/117+405686..405889hypothetical protein
LOC_Os07g01680OsAffx.16033.1.S1_at11/117+411226..411888Dirigent-like protein
LOC_Os07g01690NANA7+413199..413553hypothetical protein
LOC_Os07g01700OsAffx.28224.1.S1_at11/117+417244..417748hypothetical protein
LOC_Os07g01710Os.11806.1.S1_at11/117+423271..426822Leucine Rich Repeat family protein, expressed
LOC_Os07g01710Os.11806.2.S1_x_at11/117+423271..426822Leucine Rich Repeat family protein, expressed
LOC_Os07g01720Os.19340.1.S1_at11/117+427110..429906expressed protein
LOC_Os07g01730Os.27845.1.S1_x_at11/117+430383..435851expressed protein
LOC_Os07g01740Os.44564.1.S1_at11/117+436501..438003expressed protein
LOC_Os07g01740OsAffx.16034.1.S1_at10/117+436501..438003expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16033.1.S1_at--508--10831Chr07:411791..411815 (25 bp)
TTGTGATCATCCTGCCGGCCACCAG
LOC_Os07g01680
OsAffx.16033.1.S1_at--298--4231Chr07:411753..411777 (25 bp)
CCGCAATGTCTGTGGCGCGAGGACC
LOC_Os07g01680
OsAffx.16033.1.S1_at--823--8391Chr07:411740..411764 (25 bp)
GGCGCGAGGACCGTGGCGTTGCCAC
LOC_Os07g01680
OsAffx.16033.1.S1_at--46--9032Chr05:14813029..14813389 (25 bp)
TGCACTTGTTCATGCACGACGTCCT
NONE
OsAffx.16033.1.S1_at--767--8791Chr07:411704..411728 (25 bp)
TGTTCATGCACGACGTCCTGACCGG
LOC_Os07g01680
OsAffx.16033.1.S1_at--176--7151Chr07:411522..411546 (25 bp)
GTCTTCTCCGACATGAACGTGCCGG
LOC_Os07g01680
OsAffx.16033.1.S1_at--1053--9491Chr07:411518..411542 (25 bp)
TCTCCGACATGAACGTGCCGGCGCT
LOC_Os07g01680
OsAffx.16033.1.S1_at--1090--4551Chr07:411498..411522 (25 bp)
GCGCTGCTCTTCTGCATGAACGTGG
LOC_Os07g01680
OsAffx.16033.1.S1_at--1008--4811Chr07:411493..411517 (25 bp)
GCTCTTCTGCATGAACGTGGTGCTC
LOC_Os07g01680
OsAffx.16033.1.S1_at--795--4551Chr07:411317..411341 (25 bp)
GCGCCGACGCTGTCCTGGAGCTCGA
LOC_Os07g01680
OsAffx.16033.1.S1_at--895--2151Chr07:411281..411305 (25 bp)
ACACGCGCCCGGAGTACTTGCAGTC
LOC_Os07g01680
Target Sequence 
TTGTGATCATCCTGCCGGCCACCAGCAGCCGGTGGCGGCCGCAATGTCTGTGGCGCGAGGACCGTGGCGTTGCCACCCAC
CTGCACTTGTTCATGCACGACGTCCTGACCGGCCCGGACGCGACGGCGGTGGACGTGGTGAACGGCACGGGGCGTGCCTT
CGACGTCGCCGGCGGGCTGCGGTTCGGGCAGGTGGTGGTGATGGACGACGTGCTGACGGAGGGGCCCAGCCGGTCGTCGC
CGCGCGTGGGGCGGACGCAGGGCTTCTACGTCTTCTCCGACATGAACGTGCCGGCGCTGCTCTTCTGCATGAACGTGGTG
CTCACGGCGGGGCCGTACGCCGGCAGCACCGTCACCATCCTCGGCCGCGACCACATCACCCAGCCGCTGCGGGAGCTCTC
CGTCGTCGGCGGCACGGGGGCCTTCCGCATGGCCACCGGCTACGTGCTGTGGAGGACGGCCAGCTGGCAGTTCCGCGCCG
ACGCTGTCCTGGAGCTCGACGTCTTCGTCCACACGCGCCCGGAGTACTTGCAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis