Browse Element(s) Details


Os.33732.2.S1_at

Description gb:AK071629.1
DB_XREF= gi:32981652
TID=Os.33732.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33732 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative chitinase III (P0585H11.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023106O03, full insert sequence.
FL= gb:AK071629.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g017809/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01730Os.27845.1.S1_x_at11/117+430383..435851expressed protein
LOC_Os07g01740Os.44564.1.S1_at11/117+436501..438003expressed protein
LOC_Os07g01740OsAffx.16034.1.S1_at10/117+436501..438003expressed protein
LOC_Os07g01750OsAffx.22519.1.S1_at11/117+438728..443413MATE efflux family protein, expressed
LOC_Os07g01760Os.11824.1.S1_a_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01760Os.11824.1.S1_x_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01770Os.33732.3.S1_x_at11/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01770Os.33732.1.S1_at10/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01780Os.33732.2.S1_at9/117+456037..458517expressed protein
LOC_Os07g01790OsAffx.17581.1.S1_at11/117+461196..461405hypothetical protein
LOC_Os07g01800OsAffx.22518.1.S1_at11/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01800OsAffx.22518.1.S1_x_at11/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01800Os.20514.1.S1_x_at1/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01810Os.29959.1.S1_at11/117+465585..467052calcium-activated outward-rectifying potassium channel 6, putative, expressed
LOC_Os07g01820Os.12750.1.S1_x_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.12750.2.S1_s_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.12750.1.S1_a_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.57543.1.S1_at2/117+469473..475954MADS2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33732.2.S1_at--456--7771NONE
GGTGAACATTCCAGGCTGAAGAAGA
NONE
Os.33732.2.S1_at--1--5231Chr07:456318..456341 (24 bp)
GAATTTCGGTACATTCATGCAAAGA
LOC_Os07g01780
Os.33732.2.S1_at--224--3531Chr07:456185..456326 (25 bp)
CATGCAAAGATATTGGTTCCTCAAA
LOC_Os07g01780
Os.33732.2.S1_at--521--31Chr07:456174..456198 (25 bp)
ATTGGTTCCTCAAATTGGTGAAGAA
LOC_Os07g01780
Os.33732.2.S1_at--1137--6791Chr07:456140..456164 (25 bp)
GTTTTGTTTCAGCATTTTGCCATAC
LOC_Os07g01780
Os.33732.2.S1_at--119--1551Chr07:456130..456154 (25 bp)
AGCATTTTGCCATACACATTAATTG
LOC_Os07g01780
Os.33732.2.S1_at--781--6731Chr07:456098..456122 (25 bp)
GTTCTTCAGACTGTATGTAGCTGCC
LOC_Os07g01780
Os.33732.2.S1_at--1027--8751Chr07:456083..456107 (25 bp)
TGTAGCTGCCTGTATATGTATGTAA
LOC_Os07g01780
Os.33732.2.S1_at--762--7071Chr07:456062..456086 (25 bp)
GTAATTTCTGTGACAATGTTGATCA
LOC_Os07g01780
Os.33732.2.S1_at--496--5611Chr07:456051..456075 (25 bp)
GACAATGTTGATCAGACTTCAGAGT
LOC_Os07g01780
Os.33732.2.S1_at--687--5691Chr07:456037..456061 (25 bp)
GACTTCAGAGTATATGCATTTTGCC
NONE
Target Sequence 
GGTGAACATTCCAGGCTGAAGAAGAATCTGAATTTCGGTACATTCATGCAAAGATATTGGTTCCTCAAATTGGTGAAGAA
ACCGGTGTTGTTTTGTTTCAGCATTTTGCCATACACATTAATTGTTGTGTTGTTCTTCAGACTGTATGTAGCTGCCTGTA
TATGTATGTAATTTCTGTGACAATGTTGATCAGACTTCAGAGTATATGCATTTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33732.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis