Browse Element(s) Details


Os.12750.1.S1_x_at

Description gb:AF058698.1
DB_XREF= gi:6606071
TID=Os.12750.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12750 (NCBI UniGene Cluster)
DEF=Oryza sativa MADS15 protein mRNA, complete cds.
PROD=MADS15 protein
FL= gb:AB003325.1 gb:AF058698.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0182011/11MADS2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01760Os.11824.1.S1_a_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01760Os.11824.1.S1_x_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01770Os.33732.3.S1_x_at11/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01770Os.33732.1.S1_at10/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01780Os.33732.2.S1_at9/117+456037..458517expressed protein
LOC_Os07g01790OsAffx.17581.1.S1_at11/117+461196..461405hypothetical protein
LOC_Os07g01800OsAffx.22518.1.S1_at11/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01800OsAffx.22518.1.S1_x_at11/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01800Os.20514.1.S1_x_at1/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01810Os.29959.1.S1_at11/117+465585..467052calcium-activated outward-rectifying potassium channel 6, putative, expressed
LOC_Os07g01820Os.12750.1.S1_x_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.12750.2.S1_s_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.12750.1.S1_a_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.57543.1.S1_at2/117+469473..475954MADS2, putative, expressed
LOC_Os07g01830OsAffx.16036.1.S1_x_at9/117+489913..490657hypothetical protein
LOC_Os07g01840Os.20517.1.S1_at11/117+494780..497280expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0009933biological_processmeristem organization
GO:0010093biological_processspecification of floral organ identity
GO:0010154biological_processfruit development
GO:0045941biological_processpositive regulation of transcription
GO:0048481biological_processovule development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12750.1.S1_x_at--815--7551Chr07:469933..469957 (25 bp)
GGGCCAGGTGCAACTCCGCATCGGA
LOC_Os07g01820
Os.12750.1.S1_x_at--752--4971Chr07:469916..469940 (25 bp)
GCATCGGAGGTCTTCCGCCATGGAT
LOC_Os07g01820
Os.12750.1.S1_x_at--392--8551Chr07:469896..469920 (25 bp)
TGGATGCTGAGCCACCTCAATGCTT
LOC_Os07g01820
Os.12750.1.S1_x_at--72--5871Chr07:469888..469912 (25 bp)
GAGCCACCTCAATGCTTAAGATGAT
LOC_Os07g01820
Os.12750.1.S1_x_at--391--9411Chr07:469852..469876 (25 bp)
TCGTCGGCCAAACAGCTGCCGTATG
LOC_Os07g01820
Os.12750.1.S1_x_at--216--2411Chr07:469843..469867 (25 bp)
AAACAGCTGCCGTATGCACCGTGAA
LOC_Os07g01820
Os.12750.1.S1_x_at--91--4791Chr07:469838..469862 (25 bp)
GCTGCCGTATGCACCGTGAATCATG
LOC_Os07g01820
Os.12750.1.S1_x_at--583--10131Chr07:469831..469855 (25 bp)
TATGCACCGTGAATCATGGGAGCAA
LOC_Os07g01820
Os.12750.1.S1_x_at--465--5331Chr07:469793..469817 (25 bp)
GAAGTCATTGGTATCGATCCTAGCG
LOC_Os07g01820
Os.12750.1.S1_x_at--343--9391Chr07:469780..469804 (25 bp)
TCGATCCTAGCGATAATATATATGA
LOC_Os07g01820
Os.12750.1.S1_x_at--915--6571Chr07:469757..469781 (25 bp)
GATTCTCCTAAAATGAAATTGATCT
LOC_Os07g01820
Target Sequence 
GGGCCAGGTGCAACTCCGCATCGGAGGTCTTCCGCCATGGATGCTGAGCCACCTCAATGCTTAAGATGATCATCGTCGTC
GTCGTCGGCCAAACAGCTGCCGTATGCACCGTGAATCATGGGAGCAACCTTGAATGAATTGAAGTCATTGGTATCGATCC
TAGCGATAATATATATGATTCTCCTAAAATGAAATTGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12750.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis