Browse Element(s) Details


Os.29959.1.S1_at

Description gb:AK109604.1
DB_XREF= gi:32994813
TID=Os.29959.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29959 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative outward-rectifying potassium channel KCO1 (P0585H11.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-F01, full insert sequence.
FL= gb:AK109604.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0181011/11calcium-activated outward-rectifying potassium channel 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01750OsAffx.22519.1.S1_at11/117+438728..443413MATE efflux family protein, expressed
LOC_Os07g01760Os.11824.1.S1_a_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01760Os.11824.1.S1_x_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01770Os.33732.3.S1_x_at11/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01770Os.33732.1.S1_at10/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01780Os.33732.2.S1_at9/117+456037..458517expressed protein
LOC_Os07g01790OsAffx.17581.1.S1_at11/117+461196..461405hypothetical protein
LOC_Os07g01800OsAffx.22518.1.S1_at11/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01800OsAffx.22518.1.S1_x_at11/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01800Os.20514.1.S1_x_at1/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01810Os.29959.1.S1_at11/117+465585..467052calcium-activated outward-rectifying potassium channel 6, putative, expressed
LOC_Os07g01820Os.12750.1.S1_x_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.12750.2.S1_s_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.12750.1.S1_a_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.57543.1.S1_at2/117+469473..475954MADS2, putative, expressed
LOC_Os07g01830OsAffx.16036.1.S1_x_at9/117+489913..490657hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005774cellular_componentvacuolar membrane
GO:0005216molecular_functionion channel activity
GO:0005509molecular_functioncalcium ion binding
GO:0015269molecular_functioncalcium-activated potassium channel activity
GO:0015271molecular_functionoutward rectifier potassium channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29959.1.S1_at--268--4491Chr07:466532..466556 (25 bp)
GCCGGACCACCAACATGGACCTGGA
LOC_Os07g01810
Os.29959.1.S1_at--819--3371Chr07:466635..466659 (25 bp)
CAGCCAGGAGGACATATCGGAGTTC
LOC_Os07g01810
Os.29959.1.S1_at--892--231Chr07:466648..466672 (25 bp)
ATATCGGAGTTCCTCGACGAGTTCG
LOC_Os07g01810
Os.29959.1.S1_at--101--3651Chr07:466751..466775 (25 bp)
CTTCCCTGCGTTAGACATTTCATTT
LOC_Os07g01810
Os.29959.1.S1_at--583--10451Chr07:466761..466785 (25 bp)
TTAGACATTTCATTTCACCGCCATT
LOC_Os07g01810
Os.29959.1.S1_at--339--3571Chr07:466771..466795 (25 bp)
CATTTCACCGCCATTTTTCTTTCTT
LOC_Os07g01810
Os.29959.1.S1_at--214--3811Chr07:466811..466835 (25 bp)
CTCCTCCAAGAGTTAGTCCTACTGT
LOC_Os07g01810
Os.29959.1.S1_at--140--6791Chr07:466822..466846 (25 bp)
GTTAGTCCTACTGTACATTTACTGA
LOC_Os07g01810
Os.29959.1.S1_at--715--10051Chr07:466868..466892 (25 bp)
TAGTAGTTGTCCAAATTGAAGCCTG
LOC_Os07g01810
Os.29959.1.S1_at--706--31Chr07:466882..466906 (25 bp)
ATTGAAGCCTGTATAACATTTTCTT
LOC_Os07g01810
Os.29959.1.S1_at--22--271Chr07:466918..466942 (25 bp)
ATATGTATAACCTATTTTGCCTTTT
LOC_Os07g01810
Target Sequence 
GCCGGACCACCAACATGGACCTGGAGGCGGCGGACCTCGACGGCGACCACCGCGTCGGGGCCGCCGACTTCGTGCTGTAC
AAGCTCAAGGAGCTCGGCAAGATCAGCCAGGAGGACATATCGGAGTTCCTCGACGAGTTCGACAACCTCGACGCCGATCA
CTCCGGCACCCTCTCCCCCGCCGACCTCGCCGCCGCCCAGCCTACTCCGGACCCGCCGCCTTCCCTGCGTTAGACATTTC
ATTTCACCGCCATTTTTCTTTCTTTCTTTCTTGGAAATACTCCTCCAAGAGTTAGTCCTACTGTACATTTACTGATGTAA
ATTACTCAATTGAAATTAGTAGTTGTCCAAATTGAAGCCTGTATAACATTTTCTTTGTCTAAAATTATATGTATAACCTA
TTTTGCCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis