Browse Element(s) Details


Os.20853.1.S1_at

Description gb:AK108733.1
DB_XREF= gi:32993942
TID=Os.20853.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20853 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-D05, full insert sequence.
FL= gb:AK108733.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3892011/11Papain family cysteine protease containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38870OsAffx.6521.1.S1_at11/119+22324708..22327628hypothetical protein
LOC_Os09g38880OsAffx.18053.1.S1_at11/119+22328946..22329182hypothetical protein
LOC_Os09g38890OsAffx.6522.1.S1_at11/119+22331328..22333002hypothetical protein
LOC_Os09g38890Os.49759.1.S1_x_at1/119+22331328..22333002hypothetical protein
LOC_Os09g38900Os.48092.1.A1_at11/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900Os.35344.18.S1_x_at10/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900Os.35344.3.S1_x_at9/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900OsAffx.22940.5.S1_x_at3/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900OsAffx.22940.5.S1_at2/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38910Os.54238.1.S1_at11/119+22348258..22350996wall-associated kinase-like 1, putative, expressed
LOC_Os09g38920Os.20853.1.S1_at11/119+22351167..22353066Papain family cysteine protease containing protein, expressed
LOC_Os09g38920OsAffx.22518.1.S1_x_at1/119+22351167..22353066Papain family cysteine protease containing protein, expressed
LOC_Os09g38930OsAffx.18054.1.S1_at11/119+22354475..22356685expressed protein
LOC_Os09g38940OsAffx.18924.2.S1_x_at7/119+22358487..22360363hypothetical protein
LOC_Os09g38940OsAffx.19842.1.S1_at3/119+22358487..22360363hypothetical protein
LOC_Os09g38940OsAffx.18924.3.S1_at1/119+22358487..22360363hypothetical protein
LOC_Os09g38940OsAffx.19421.1.S1_at1/119+22358487..22360363hypothetical protein
LOC_Os09g38950Os.52564.1.S1_at6/119+22361130..22366210retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g38950Os.14444.1.S1_at1/119+22361130..22366210retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g38960Os.26972.1.S1_at11/119+22367307..22373131Potassium transporter 11, putative, expressed
LOC_Os09g38960OsAffx.18389.1.S1_at1/119+22367307..22373131Potassium transporter 11, putative, expressed
LOC_Os09g38970Os.18044.1.S1_s_at11/119+22376424..22381905DHHC zinc finger domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0007568biological_processaging
GO:0009723biological_processresponse to ethylene stimulus
GO:0010150biological_processleaf senescence
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20853.1.S1_at--210--1671Chr09:22351634..22351658 (25 bp)
AGCCCGTGGCCGTGTCCATCGAGGC
LOC_Os09g38920
Os.20853.1.S1_at--502--8391Chr09:22351605..22351629 (25 bp)
GGCGACAACTTCCAGCACTACAGGA
LOC_Os09g38920
Os.20853.1.S1_at--606--4351Chr09:22351594..22351618 (25 bp)
CCAGCACTACAGGAAGGGCGTGTAC
LOC_Os09g38920
Os.20853.1.S1_at--896--7551Chr09:22351435..22351459 (25 bp)
GGGCGACCAGGGATACATCAAGATG
LOC_Os09g38920
Os.20853.1.S1_at--922--7131Chr09:22351357..22351381 (25 bp)
GTCATTCCCGCTCATGTGATCTCTA
LOC_Os09g38920
Os.20853.1.S1_at--270--7411Chr09:22351342..22351366 (25 bp)
GTGATCTCTACATTTTTCTAAGTTA
LOC_Os09g38920
Os.20853.1.S1_at--157--8011Chr09:22351283..22351307 (25 bp)
GGATGGTGTTCATCGCGTGCACGAT
LOC_Os09g38920
Os.20853.1.S1_at--640--7331Chr09:22351267..22351291 (25 bp)
GTGCACGATGCACCTACACACACTA
LOC_Os09g38920
Os.20853.1.S1_at--692--3291Chr09:22351251..22351275 (25 bp)
CACACACTACGCTGTTAATATTACG
LOC_Os09g38920
Os.20853.1.S1_at--330--211Chr09:22351234..22351258 (25 bp)
ATATTACGTGTAAAACTCGCGAATC
LOC_Os09g38920
Os.20853.1.S1_at--81--7051Chr09:22351225..22351249 (25 bp)
GTAAAACTCGCGAATCACATGATTG
LOC_Os09g38920
Target Sequence 
AGCCCGTGGCCGTGTCCATCGAGGCCGGCGGCGACAACTTCCAGCACTACAGGAAGGGCGTGTACGACGGGCCGTGCGGG
ACGCGGCTCAACCACGGCGTCACCGTCGTCGGCTACGGCCAGGAGGAGGCGGCGGCGGACGGCGGCGCCGCCGGCGGCGA
CAAGTACTGGATCATCAAGAACTCGTGGGGGAAGAACTGGGGCGACCAGGGATACATCAAGATGAAGAAGGACGTCGCCG
GCAAGCCGGAGGGGCTCTGCGGCATCGCCATCCGGCCGTCATTCCCGCTCATGTGATCTCTACATTTTTCTAAGTTAGTA
GCTTTCAAATTAGTCAAACTTAGGAAATTTGGGATGGTGTTCATCGCGTGCACGATGCACCTACACACACTACGCTGTTA
ATATTACGTGTAAAACTCGCGAATCACATGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis