Browse Element(s) Details


OsAffx.18053.1.S1_at

Description tigr:9637.m03314
TID=OsAffx.18053.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3888011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38830OsAffx.18050.1.S1_at11/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38830OsAffx.30194.1.S1_x_at1/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38830Os.50240.1.S1_at1/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38840OsAffx.30194.1.S1_x_at11/119+22311184..22314011wall-associated kinase-like 1, putative, expressed
LOC_Os09g38840OsAffx.30194.2.S1_at1/119+22311184..22314011wall-associated kinase-like 1, putative, expressed
LOC_Os09g38850Os.25404.1.A1_at6/119+22315284..22318271wall-associated kinase-like 1, putative, expressed
LOC_Os09g38860OsAffx.18052.1.S1_at11/119+22318388..22320008hypothetical protein
LOC_Os09g38870OsAffx.6521.1.S1_at11/119+22324708..22327628hypothetical protein
LOC_Os09g38880OsAffx.18053.1.S1_at11/119+22328946..22329182hypothetical protein
LOC_Os09g38890OsAffx.6522.1.S1_at11/119+22331328..22333002hypothetical protein
LOC_Os09g38890Os.49759.1.S1_x_at1/119+22331328..22333002hypothetical protein
LOC_Os09g38900Os.48092.1.A1_at11/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900Os.35344.18.S1_x_at10/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900Os.35344.3.S1_x_at9/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900OsAffx.22940.5.S1_x_at3/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900OsAffx.22940.5.S1_at2/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38910Os.54238.1.S1_at11/119+22348258..22350996wall-associated kinase-like 1, putative, expressed
LOC_Os09g38920Os.20853.1.S1_at11/119+22351167..22353066Papain family cysteine protease containing protein, expressed
LOC_Os09g38920OsAffx.22518.1.S1_x_at1/119+22351167..22353066Papain family cysteine protease containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18053.1.S1_at--852--5291Chr09:22329124..22329148 (25 bp)
GAAGGGTGTTTGAGCTCCAGGAAGA
LOC_Os09g38880
OsAffx.18053.1.S1_at--603--2791Chr09:22329103..22329127 (25 bp)
AAGAGGAGCAGGGACTTCATCTCCT
LOC_Os09g38880
OsAffx.18053.1.S1_at--616--5931Chr09:22329098..22329122 (25 bp)
GAGCAGGGACTTCATCTCCTGGAGT
LOC_Os09g38880
OsAffx.18053.1.S1_at--154--9611Chr09:22329087..22329111 (25 bp)
TCATCTCCTGGAGTTGGTACTCCAG
LOC_Os09g38880
OsAffx.18053.1.S1_at--819--6051Chr09:22329077..22329101 (25 bp)
GAGTTGGTACTCCAGCTCAAGAACC
LOC_Os09g38880
OsAffx.18053.1.S1_at--577--10771Chr09:22329074..22329098 (25 bp)
TTGGTACTCCAGCTCAAGAACCAAG
LOC_Os09g38880
OsAffx.18053.1.S1_at--1060--10411Chr09:22329049..22329073 (25 bp)
TTAGATCAATAACACCAAGCAGGAG
LOC_Os09g38880
OsAffx.18053.1.S1_at--38--2171Chr09:22329038..22329062 (25 bp)
ACACCAAGCAGGAGGATTAGCTGCA
LOC_Os09g38880
OsAffx.18053.1.S1_at--634--935Chr12:12398619..12398643 (25 bp)
AGGAAGAGAATCACCAGTAGCAGAT
NONE
OsAffx.18053.1.S1_at--854--3431Chr09:22328991..22329015 (25 bp)
CAGATCAAGCAAGATGACGGAGAGC
LOC_Os09g38880
OsAffx.18053.1.S1_at--283--5751Chr09:22328976..22329000 (25 bp)
GACGGAGAGCAGGTCCAGGAACCAA
LOC_Os09g38880
Target Sequence 
GAAGGGTGTTTGAGCTCCAGGAAGAGGAGCAGGGACTTCATCTCCTGGAGTTGGTACTCCAGCTCAAGAACCAAGTTAGA
TCAATAACACCAAGCAGGAGGATTAGCTGCAGGAGGAAGAGAATCACCAGTAGCAGATCAAGCAAGATGACGGAGAGCAG
GTCCAGGAACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18053.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis