Browse Element(s) Details


OsAffx.30194.2.S1_at

Description tigr:9637.m03306
TID=OsAffx.30194.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3880011/11wall-associated kinase-like 1, putative
LOC_Os09g388401/11wall-associated kinase-like 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38750OsAffx.18049.1.S1_at11/119+22265170..22268354expressed protein
LOC_Os09g38759Os.14296.1.S1_at10/119+22272465..22274489Dihydroneopterin aldolase, putative, expressed
LOC_Os09g38768Os.25141.1.S1_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38768OsAffx.6520.1.S1_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38768OsAffx.6520.1.S1_x_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38777Os.9868.1.S1_at11/119+22277811..22283715molybdenum cofactor sulfurase family protein, putative, expressed
LOC_Os09g38777Os.10545.1.S1_at11/119+22277811..22283715molybdenum cofactor sulfurase family protein, putative, expressed
LOC_Os09g38790Os.37725.1.A1_s_at11/119+22286696..22291247Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38790Os.8410.1.S1_at11/119+22286696..22291247Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38800OsAffx.30194.2.S1_at11/119+22291930..22295105wall-associated kinase-like 1, putative
LOC_Os09g38800OsAffx.30194.1.S1_x_at1/119+22291930..22295105wall-associated kinase-like 1, putative
LOC_Os09g38814OsAffx.21820.1.S1_at2/119+22298687..22299046NA
LOC_Os09g38814OsAffx.21820.1.S1_x_at1/119+22298687..22299046NA
LOC_Os09g38830OsAffx.18050.1.S1_at11/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38830OsAffx.30194.1.S1_x_at1/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38830Os.50240.1.S1_at1/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38840OsAffx.30194.1.S1_x_at11/119+22311184..22314011wall-associated kinase-like 1, putative, expressed
LOC_Os09g38840OsAffx.30194.2.S1_at1/119+22311184..22314011wall-associated kinase-like 1, putative, expressed
LOC_Os09g38850Os.25404.1.A1_at6/119+22315284..22318271wall-associated kinase-like 1, putative, expressed
LOC_Os09g38860OsAffx.18052.1.S1_at11/119+22318388..22320008hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30194.2.S1_at--975--1731Chr09:22294078..22294102 (25 bp)
ACCATATTCATACAGATCGGCTGAG
LOC_Os09g38800
OsAffx.30194.2.S1_at--369--2291Chr09:22294192..22294216 (25 bp)
AAAGGAAGTTAATGATGTAGCCACA
LOC_Os09g38800
OsAffx.30194.2.S1_at--1077--6271Chr09:22294205..22294229 (25 bp)
GATGTAGCCACATTAGCTGTGGCAT
LOC_Os09g38800
OsAffx.30194.2.S1_at--1054--1992Chr09:22294282..22294306 (25 bp)
ACTCGAGAGCATTCGGCAAGAAGTA
LOC_Os09g38800
OsAffx.30194.2.S1_at--254--1371Chr09:22294287..22294311 (25 bp)
AGAGCATTCGGCAAGAAGTACTGCA
LOC_Os09g38800
OsAffx.30194.2.S1_at--322--7651Chr09:22294977..22295001 (25 bp)
GGGAGTATCTTCTACCAAGCTGTCG
LOC_Os09g38800
OsAffx.30194.2.S1_at--211--9991Chr09:22294989..22295013 (25 bp)
TACCAAGCTGTCGACACTTCAATTG
LOC_Os09g38800
OsAffx.30194.2.S1_at--592--4731Chr09:22294995..22295019 (25 bp)
GCTGTCGACACTTCAATTGTAATAG
LOC_Os09g38800
OsAffx.30194.2.S1_at--631--10051Chr09:22295017..22295041 (25 bp)
TAGTTAGCGATGTTGGTTCCAGCGA
LOC_Os09g38800
OsAffx.30194.2.S1_at--809--8571Chr09:22295030..22295054 (25 bp)
TGGTTCCAGCGATAACTTGTGCGAC
LOC_Os09g38800
OsAffx.30194.2.S1_at--514--351Chr09:22295041..22295065 (25 bp)
ATAACTTGTGCGACGGCGCTGTGAT
LOC_Os09g38800
Target Sequence 
ACCATATTCATACAGATCGGCTGAGGATGAGAGCCTTGTTGCACATTTCAGTACCCTACATGCACAGGGCAACTTGGGTG
ACATACTTGATGCGCAGGTTATAGAGGAGGGAACAAAGGAAGTTAATGATGTAGCCACATTAGCTGTGGCATGTGCCAAG
TTGAAAGCAGAAGAGCGACCGACTATGAGACAGGTGGAAATGACACTCGAGAGCATTCGGCAAGAAGTACTGCATAGTGT
GAGCACAAAGAAATCTAAGGAGCTTCACGTCTCATGGAACCATGCAATAAGTGAGGGGAGTATCTTCTACCAAGCTGTCG
ACACTTCAATTGTAATAGTTAGCGATGTTGGTTCCAGCGATAACTTGTGCGACGGCGCTGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30194.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis