Browse Element(s) Details


OsAffx.21820.1.S1_x_at

Description tigr:9629.m06521
TID=OsAffx.21820.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6575010/11transposon protein, putative, unclassified
LOC_Os09g388141/11
LOC_Os03g251501/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65690Os.27629.1.S1_at11/111+38471634..384729904,5-DOPA dioxygenase extradiol, putative, expressed
LOC_Os01g65692Os.6626.1.S1_x_at1/111+38473872..38474647expressed protein
LOC_Os01g65694Os.55613.1.S1_at11/111+38473922..38474867expressed protein
LOC_Os01g65700Os.12038.1.S1_at11/111+38475533..38476487expressed protein
LOC_Os01g65710OsAffx.23928.1.S1_at11/111+38478214..38478891expressed protein
LOC_Os01g65720Os.15928.1.S1_at11/111+38480994..38483864glycosyl hydrolase family protein 43, putative, expressed
LOC_Os01g65730OsAffx.21821.1.S1_at11/111+38484404..38486621SET domain containing protein, expressed
LOC_Os01g65740OsAffx.9622.1.S1_at11/111+38491386..38493994uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os01g65750OsAffx.21820.1.S1_x_at10/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65750OsAffx.21820.1.S1_at9/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65750OsAffx.21820.2.S1_x_at3/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65760Os.34112.1.S1_at11/111+38499619..38501067retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g65770Os.55523.1.S1_at11/111+38518670..38519374expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21820.1.S1_x_at--622--1773Chr05:25686859..25686883 (25 bp)
ACCTGGCGTCGCTAGCGCGCAAGTA
NONE
OsAffx.21820.1.S1_x_at--433--2812Chr01:38498526..38498550 (25 bp)
AAGTACGGGCCCATCATGTACCTCA
LOC_Os01g65750
OsAffx.21820.1.S1_x_at--106--415Chr09:9527135..9527158 (24 bp)
ATCATGTACCTCAAGATGGGCACCT
NONE
OsAffx.21820.1.S1_x_at--707--771Chr01:38498477..38498501 (25 bp)
ATGTGCGTGGCGAGGGCTTTCTTTC
LOC_Os01g65750
OsAffx.21820.1.S1_x_at--1105--3971Chr01:38498475..38498496 (22 bp)
CGTGGCGAGGGCTTTCTTTCCGAGC
LOC_Os01g65750
OsAffx.21820.1.S1_x_at--838--6111NONE
GAGGGCTTTCTTTCCGAGCCCGAGT
NONE
OsAffx.21820.1.S1_x_at--11--10298Chr08:2867386..2867405 (20 bp)
TTTCCGAGCCCGAGTTCGAGGAAGC
NONE
OsAffx.21820.1.S1_x_at--760--4079Chr08:2867391..2867413 (23 bp)
CGAGTTCGAGGAAGCTCCGGACGTT
NONE
OsAffx.21820.1.S1_x_at--971--10619Chr08:2867395..2867499 (25 bp)
TTCGAGGAAGCTCCGGACGTTGTTT
NONE
OsAffx.21820.1.S1_x_at--538--6171Chr01:38496626..38496650 (25 bp)
GAGGAAGCTCCGGACGTTGTTTTCG
LOC_Os01g65750
OsAffx.21820.1.S1_x_at--1088--5391Chr01:38496623..38496647 (25 bp)
GAAGCTCCGGACGTTGTTTTCGAGG
LOC_Os01g65750
Target Sequence 
ACCTGGCGTCGCTAGCGCGCAAGTACGGGCCCATCATGTACCTCAAGATGGGCACCTGCGGCGTCGTCGATGTGCGTGGC
GAGGGCTTTCTTTCCGAGCCCGAGTTCGAGGAAGCTCCGGACGTTGTTTTCGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21820.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis