Browse Element(s) Details


OsAffx.23928.1.S1_at

Description tigr:9629.m06517
TID=OsAffx.23928.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6571011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65670Os.10972.2.S1_x_at11/111+38460282..38464619amino acid permease 6, putative, expressed
LOC_Os01g65670Os.10972.1.S1_at11/111+38460282..38464619amino acid permease 6, putative, expressed
LOC_Os01g65680Os.10240.1.S1_at11/111+38465963..38469488Catalytic LigB subunit of aromatic ring-opening dioxygenase family protein, expressed
LOC_Os01g65690Os.27629.1.S1_at11/111+38471634..384729904,5-DOPA dioxygenase extradiol, putative, expressed
LOC_Os01g65692Os.6626.1.S1_x_at1/111+38473872..38474647expressed protein
LOC_Os01g65694Os.55613.1.S1_at11/111+38473922..38474867expressed protein
LOC_Os01g65700Os.12038.1.S1_at11/111+38475533..38476487expressed protein
LOC_Os01g65710OsAffx.23928.1.S1_at11/111+38478214..38478891expressed protein
LOC_Os01g65720Os.15928.1.S1_at11/111+38480994..38483864glycosyl hydrolase family protein 43, putative, expressed
LOC_Os01g65730OsAffx.21821.1.S1_at11/111+38484404..38486621SET domain containing protein, expressed
LOC_Os01g65740OsAffx.9622.1.S1_at11/111+38491386..38493994uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os01g65750OsAffx.21820.1.S1_x_at10/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65750OsAffx.21820.1.S1_at9/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65750OsAffx.21820.2.S1_x_at3/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65760Os.34112.1.S1_at11/111+38499619..38501067retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23928.1.S1_at--324--6731Chr01:38478342..38478366 (25 bp)
GTTCTCGTCACGCAGCAAGATAGGC
LOC_Os01g65710
OsAffx.23928.1.S1_at--687--271Chr01:38478361..38478385 (25 bp)
ATAGGCAAGGACATCATCGACAAGA
LOC_Os01g65710
OsAffx.23928.1.S1_at--407--411Chr01:38478373..38478397 (25 bp)
ATCATCGACAAGACGGTCAGCTTCA
LOC_Os01g65710
OsAffx.23928.1.S1_at--306--4111Chr01:38478378..38478402 (25 bp)
CGACAAGACGGTCAGCTTCACCCTG
LOC_Os01g65710
OsAffx.23928.1.S1_at--903--4351Chr01:38478405..38478429 (25 bp)
CCAGCAGGAGACCATGAACAGGACG
LOC_Os01g65710
OsAffx.23928.1.S1_at--47--9451Chr01:38478521..38478545 (25 bp)
TCGGCAGCATGTACGTCTTCCGCGA
LOC_Os01g65710
OsAffx.23928.1.S1_at--1145--8091Chr01:38478599..38478623 (25 bp)
GGACCTCCATCTCGACGAGCTTCGA
LOC_Os01g65710
OsAffx.23928.1.S1_at--747--9231Chr01:38478604..38478628 (25 bp)
TCCATCTCGACGAGCTTCGACTGCG
LOC_Os01g65710
OsAffx.23928.1.S1_at--152--4691Chr01:38478816..38478840 (25 bp)
GCGGACTCGGACGACGTACAAGATG
LOC_Os01g65710
OsAffx.23928.1.S1_at--116--9431Chr01:38478822..38478846 (25 bp)
TCGGACGACGTACAAGATGGAGCTT
LOC_Os01g65710
OsAffx.23928.1.S1_at--954--2791Chr01:38478835..38478859 (25 bp)
AAGATGGAGCTTCGCTTGTACTGGC
LOC_Os01g65710
Target Sequence 
GTTCTCGTCACGCAGCAAGATAGGCAAGGACATCATCGACAAGACGGTCAGCTTCACCCTGTACCAGCAGGAGACCATGA
ACAGGACGGGGTACGTCGTCGTCCCCGGCGTCGACGCGCCCGCGCCCGCGAGGGTCGTCGTCAGCGACGCCGGCGAGCCC
TCCGCCGACAGGCAGCCCTTCGGCAGCATGTACGTCTTCCGCGACAACCTGACGGTGCGCGCCGACAGCTCCTCCCGTGT
CGCCGGCGTGGCGGAGGGGACCTCCATCTCGACGAGCTTCGACTGCGAGGACGGCCGGAGGAGCGTGTCGGTGGCCAAGA
TCACGCTCCACCACCGCGGATACCGGGGCTCCGTGTCCATCCTCGGGGGCACGCCCAACATCACCAGGCCGTCCGTGTAC
CCGGTGGTCGGTGGCACCGGCGACTTCCTGTACGCCGTCGGCTACGTCCGGTCGTCGCCGGTGGACACGCGTGGGCGGAC
TCGGACGACGTACAAGATGGAGCTTCGCTTGTACTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23928.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis