Browse Element(s) Details


Os.27629.1.S1_at

Description gb:AK104652.1
DB_XREF= gi:32989861
TID=Os.27629.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.27629 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0471B04.18 (P0471B04.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-311-C01, full insert sequence.
FL= gb:AK104432.1 gb:AK104601.1 gb:AK104652.1 gb:AK104545.1 gb:AK104462.1 gb:AK060927.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6569011/114,5-DOPA dioxygenase extradiol, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65660Os.17259.1.S1_at11/111+38444788..38447609amino acid permease, putative, expressed
LOC_Os01g65670Os.10972.2.S1_x_at11/111+38460282..38464619amino acid permease 6, putative, expressed
LOC_Os01g65670Os.10972.1.S1_at11/111+38460282..38464619amino acid permease 6, putative, expressed
LOC_Os01g65680Os.10240.1.S1_at11/111+38465963..38469488Catalytic LigB subunit of aromatic ring-opening dioxygenase family protein, expressed
LOC_Os01g65690Os.27629.1.S1_at11/111+38471634..384729904,5-DOPA dioxygenase extradiol, putative, expressed
LOC_Os01g65692Os.6626.1.S1_x_at1/111+38473872..38474647expressed protein
LOC_Os01g65694Os.55613.1.S1_at11/111+38473922..38474867expressed protein
LOC_Os01g65700Os.12038.1.S1_at11/111+38475533..38476487expressed protein
LOC_Os01g65710OsAffx.23928.1.S1_at11/111+38478214..38478891expressed protein
LOC_Os01g65720Os.15928.1.S1_at11/111+38480994..38483864glycosyl hydrolase family protein 43, putative, expressed
LOC_Os01g65730OsAffx.21821.1.S1_at11/111+38484404..38486621SET domain containing protein, expressed
LOC_Os01g65740OsAffx.9622.1.S1_at11/111+38491386..38493994uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os01g65750OsAffx.21820.1.S1_x_at10/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65750OsAffx.21820.1.S1_at9/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65750OsAffx.21820.2.S1_x_at3/111+38496585..38498757transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006725biological_processaromatic compound metabolism
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27629.1.S1_at--580--3351Chr01:38472149..38472173 (25 bp)
CACGCACAACCTTAGCTGCATGGCG
LOC_Os01g65690
Os.27629.1.S1_at--1083--5451Chr01:38472005..38472029 (25 bp)
GAACGGTAAGATGGCGCACCCGTCG
LOC_Os01g65690
Os.27629.1.S1_at--1091--291Chr01:38471907..38471931 (25 bp)
ATAGCTGGTACAACGCGACGCTCTC
LOC_Os01g65690
Os.27629.1.S1_at--407--1431Chr01:38471850..38471874 (25 bp)
AGAACAAACCGATTGCCGCATGCAA
LOC_Os01g65690
Os.27629.1.S1_at--613--2111Chr01:38471817..38471841 (25 bp)
ACATGTCTTGCTTATATCATCGCCA
LOC_Os01g65690
Os.27629.1.S1_at--453--10171Chr01:38471803..38471827 (25 bp)
TATCATCGCCATTTTACTCTTAACA
LOC_Os01g65690
Os.27629.1.S1_at--938--9751Chr01:38471773..38471797 (25 bp)
TAATCTCCGTGGGATCTACGTTAAT
LOC_Os01g65690
Os.27629.1.S1_at--924--9751Chr01:38471749..38471773 (25 bp)
TATACTCCTATTAACGTAGACGTAC
LOC_Os01g65690
Os.27629.1.S1_at--1018--6911Chr01:38471734..38471758 (25 bp)
GTAGACGTACGTTCGTGCCTGTATT
LOC_Os01g65690
Os.27629.1.S1_at--848--7271Chr01:38471720..38471744 (25 bp)
GTGCCTGTATTTCCTAACGGCCGTG
LOC_Os01g65690
Os.27629.1.S1_at--485--2571Chr01:38471705..38471729 (25 bp)
AACGGCCGTGTCTTGTGGTTTTCAG
LOC_Os01g65690
Target Sequence 
CACGCACAACCTTAGCTGCATGGCGCCCGTCGCCGAGGGCACGCCGGTGCCCCAGTGGGCGGCGGAGTTCGACGGGTGGC
TGCAGGAGGCGCTCCTCGCGGGCGGGAGGCACGACGACGTGAAGCAGTACGAGGAGAAGGCGCCGAACGGTAAGATGGCG
CACCCGTCGCCGGACCACTTCCTCCCGCTGCACGTCGCGCTCGGCGCCGCCGGGGAGGATGCCAAGGCGGAGCTGATCCA
CCATAGCTGGTACAACGCGACGCTCTCCCACGCGTCGTACCGCTTCACCACCACCACCAAGAACAAACCGATTGCCGCAT
GCAAAGAGTGAAACATGTCTTGCTTATATCATCGCCATTTTACTCTTAACAATTAATAATCTCCGTGGGATCTACGTTAA
TATACTCCTATTAACGTAGACGTACGTTCGTGCCTGTATTTCCTAACGGCCGTGTCTTGTGGTTTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis