Browse Element(s) Details


OsAffx.21821.1.S1_at

Description tigr:9629.m06519
TID=OsAffx.21821.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SET domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6573011/11SET domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65670Os.10972.2.S1_x_at11/111+38460282..38464619amino acid permease 6, putative, expressed
LOC_Os01g65670Os.10972.1.S1_at11/111+38460282..38464619amino acid permease 6, putative, expressed
LOC_Os01g65680Os.10240.1.S1_at11/111+38465963..38469488Catalytic LigB subunit of aromatic ring-opening dioxygenase family protein, expressed
LOC_Os01g65690Os.27629.1.S1_at11/111+38471634..384729904,5-DOPA dioxygenase extradiol, putative, expressed
LOC_Os01g65692Os.6626.1.S1_x_at1/111+38473872..38474647expressed protein
LOC_Os01g65694Os.55613.1.S1_at11/111+38473922..38474867expressed protein
LOC_Os01g65700Os.12038.1.S1_at11/111+38475533..38476487expressed protein
LOC_Os01g65710OsAffx.23928.1.S1_at11/111+38478214..38478891expressed protein
LOC_Os01g65720Os.15928.1.S1_at11/111+38480994..38483864glycosyl hydrolase family protein 43, putative, expressed
LOC_Os01g65730OsAffx.21821.1.S1_at11/111+38484404..38486621SET domain containing protein, expressed
LOC_Os01g65740OsAffx.9622.1.S1_at11/111+38491386..38493994uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os01g65750OsAffx.21820.1.S1_x_at10/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65750OsAffx.21820.1.S1_at9/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65750OsAffx.21820.2.S1_x_at3/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65760Os.34112.1.S1_at11/111+38499619..38501067retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21821.1.S1_at--480--7091Chr01:38484970..38484994 (25 bp)
GTCAACATCGACTTAGCTCTGGTTA
LOC_Os01g65730
OsAffx.21821.1.S1_at--764--2871Chr01:38484943..38484967 (25 bp)
AAGTGGTGCTCTTCTAAGTACTCCC
LOC_Os01g65730
OsAffx.21821.1.S1_at--143--9791Chr01:38484929..38484953 (25 bp)
TAAGTACTCCCGTCGATATGCAAGA
LOC_Os01g65730
OsAffx.21821.1.S1_at--734--6891Chr01:38484898..38484922 (25 bp)
GTATCACTCTGGCATAATCTGGGCT
LOC_Os01g65730
OsAffx.21821.1.S1_at--661--1372Chr03:22591707..22591726 (20 bp)
AGAGCCCCAGCTTGAACTTTTGATC
NONE
OsAffx.21821.1.S1_at--164--571Chr01:38484799..38484823 (25 bp)
ATCCTGCTTTATATCATCTCCTTGA
LOC_Os01g65730
OsAffx.21821.1.S1_at--822--1371Chr01:38484603..38484627 (25 bp)
AGAGCGTTTGTTCTGCACTTGTATC
LOC_Os01g65730
OsAffx.21821.1.S1_at--602--5111Chr01:38484589..38484613 (25 bp)
GCACTTGTATCCCTTGTTGACATGA
LOC_Os01g65730
OsAffx.21821.1.S1_at--918--8051Chr01:38484563..38484587 (25 bp)
GGAGAGCCTCTATGGTTCAAACACT
LOC_Os01g65730
OsAffx.21821.1.S1_at--495--2551Chr01:38484519..38484543 (25 bp)
AACTGCAAGCATGCTCTTCTGTCAA
LOC_Os01g65730
OsAffx.21821.1.S1_at--1081--451Chr01:38484486..38484510 (25 bp)
ATCTCTATCATTCTTTGGTGCTGCG
LOC_Os01g65730
Target Sequence 
GTCAACATCGACTTAGCTCTGGTTACTAAGTGGTGCTCTTCTAAGTACTCCCGTCGATATGCAAGAGCAAGGGTATCACT
CTGGCATAATCTGGGCTATTCAGGTTGCACCAGCCAAGATGCTGACTACTTTGAGATTTCATATGATGGAGAGCCCCAGC
TTGAACTTTTGATCCTGCTTTATATCATCTCCTTGAAGTCTGATGCTTATGACAAGCTGGCCAGCGTGGCTCATGATCTG
ATTGGTGATGATGAGGTCGACAGCATTAGTAGTGTGCTTAAGGTTGTCAGAGTAACAAGCTCCAATCAACATCCAGATAT
TAGCGGGCTTGAAAAATTGCCTGATGTTAAGAAGCTATTGCTTAATGAGAGCGTTTGTTCTGCACTTGTATCCCTTGTTG
ACATGAGGGAGAGCCTCTATGGTTCAAACACTTTGGAAGATGACAGGCAAAAACTGCAAGCATGCTCTTCTGTCAACGAA
AGGAATCTCTATCATTCTTTGGTGCTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis