Browse Element(s) Details


Os.12038.1.S1_at

Description gb:AK109033.1
DB_XREF= gi:32994242
TID=Os.12038.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12038 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0471B04.20 (P0471B04.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-154-C05, full insert sequence.
FL= gb:AK109033.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6570011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65670Os.10972.2.S1_x_at11/111+38460282..38464619amino acid permease 6, putative, expressed
LOC_Os01g65670Os.10972.1.S1_at11/111+38460282..38464619amino acid permease 6, putative, expressed
LOC_Os01g65680Os.10240.1.S1_at11/111+38465963..38469488Catalytic LigB subunit of aromatic ring-opening dioxygenase family protein, expressed
LOC_Os01g65690Os.27629.1.S1_at11/111+38471634..384729904,5-DOPA dioxygenase extradiol, putative, expressed
LOC_Os01g65692Os.6626.1.S1_x_at1/111+38473872..38474647expressed protein
LOC_Os01g65694Os.55613.1.S1_at11/111+38473922..38474867expressed protein
LOC_Os01g65700Os.12038.1.S1_at11/111+38475533..38476487expressed protein
LOC_Os01g65710OsAffx.23928.1.S1_at11/111+38478214..38478891expressed protein
LOC_Os01g65720Os.15928.1.S1_at11/111+38480994..38483864glycosyl hydrolase family protein 43, putative, expressed
LOC_Os01g65730OsAffx.21821.1.S1_at11/111+38484404..38486621SET domain containing protein, expressed
LOC_Os01g65740OsAffx.9622.1.S1_at11/111+38491386..38493994uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os01g65750OsAffx.21820.1.S1_x_at10/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65750OsAffx.21820.1.S1_at9/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65750OsAffx.21820.2.S1_x_at3/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65760Os.34112.1.S1_at11/111+38499619..38501067retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12038.1.S1_at--792--7371Chr01:38475897..38475921 (25 bp)
GTGACGACCAGCTTCGACGGGCTGA
LOC_Os01g65700
Os.12038.1.S1_at--695--8091Chr01:38475922..38475946 (25 bp)
GGAGCCTGTCGCTGGGCAAGATCAC
LOC_Os01g65700
Os.12038.1.S1_at--15--511Chr01:38476094..38476118 (25 bp)
ATCGTCGGTCACGTTCAAGGTGGAG
LOC_Os01g65700
Os.12038.1.S1_at--585--10471Chr01:38476148..38476172 (25 bp)
TTACGCTCCAACTTCAAAGCACTAG
LOC_Os01g65700
Os.12038.1.S1_at--757--2851Chr01:38476175..38476199 (25 bp)
AAGTCGCTGTCTTCCACCTTGATGA
LOC_Os01g65700
Os.12038.1.S1_at--930--1651Chr01:38476199..38476223 (25 bp)
AGCGCGTCTGCGTGTGTACTCGTTT
LOC_Os01g65700
Os.12038.1.S1_at--274--1811Chr01:38476216..38476240 (25 bp)
ACTCGTTTCTGGCAGTCCGATATTA
LOC_Os01g65700
Os.12038.1.S1_at--181--10371Chr01:38476261..38476285 (25 bp)
TTTTTCAGTCTCTCGCTGAGTAGTT
LOC_Os01g65700
Os.12038.1.S1_at--346--2031Chr01:38476384..38476408 (25 bp)
ACTACGGATGATGCGCTTATCGGAC
LOC_Os01g65700
Os.12038.1.S1_at--567--491Chr01:38476402..38476426 (25 bp)
ATCGGACGCTTGTTGTTCGGTGATA
LOC_Os01g65700
Os.12038.1.S1_at--768--1291Chr01:38476441..38476465 (25 bp)
AGATCCTCGGATAGTCAGACTTTGC
LOC_Os01g65700
Target Sequence 
GTGACGACCAGCTTCGACGGGCTGAGGAGCCTGTCGCTGGGCAAGATCACGCTCGACCACCGCGGCCGCCGGGGATCCAT
GTCCGTCCTCGGGGGCACGCACAACACCCGGCCGTCCGACTGCCCGGTGGTCGGCGGCACAGGTGACTTCGCGTACGCCG
TCGGCTACGTCCGGACGTCGCCGGTGAACCTGCGGGGATCGTCGGTCACGTTCAAGGTGGAGTTTCACCTGTACTGGCCA
CCGTATGCTCATTACGCTCCAACTTCAAAGCACTAGACAAGTCGCTGTCTTCCACCTTGATGAGCGCGTCTGCGTGTGTA
CTCGTTTCTGGCAGTCCGATATTATATCATGCATCTGCCTATTTTTTTTCAGTCTCTCGCTGAGTAGTTAATATAGAGTT
TGAATTACCTCTGGGAGGTATTTCCGTATTTGGTGTAATAAAATTCAAGATTGATAATCTGAGGAATTTTCATGAAAAAA
TTAAACTACTACGGATGATGCGCTTATCGGACGCTTGTTGTTCGGTGATAGTACTACTTAAAAAAGATCCTCGGATAGTC
AGACTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12038.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis