Browse Element(s) Details


Os.55613.1.S1_at

Description gb:AK108415.1
DB_XREF= gi:32993624
TID=Os.55613.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55613 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-H06, full insert sequence.
FL= gb:AK108415.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6569411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65670Os.10972.2.S1_x_at11/111+38460282..38464619amino acid permease 6, putative, expressed
LOC_Os01g65670Os.10972.1.S1_at11/111+38460282..38464619amino acid permease 6, putative, expressed
LOC_Os01g65680Os.10240.1.S1_at11/111+38465963..38469488Catalytic LigB subunit of aromatic ring-opening dioxygenase family protein, expressed
LOC_Os01g65690Os.27629.1.S1_at11/111+38471634..384729904,5-DOPA dioxygenase extradiol, putative, expressed
LOC_Os01g65692Os.6626.1.S1_x_at1/111+38473872..38474647expressed protein
LOC_Os01g65694Os.55613.1.S1_at11/111+38473922..38474867expressed protein
LOC_Os01g65700Os.12038.1.S1_at11/111+38475533..38476487expressed protein
LOC_Os01g65710OsAffx.23928.1.S1_at11/111+38478214..38478891expressed protein
LOC_Os01g65720Os.15928.1.S1_at11/111+38480994..38483864glycosyl hydrolase family protein 43, putative, expressed
LOC_Os01g65730OsAffx.21821.1.S1_at11/111+38484404..38486621SET domain containing protein, expressed
LOC_Os01g65740OsAffx.9622.1.S1_at11/111+38491386..38493994uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os01g65750OsAffx.21820.1.S1_x_at10/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65750OsAffx.21820.1.S1_at9/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65750OsAffx.21820.2.S1_x_at3/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65760Os.34112.1.S1_at11/111+38499619..38501067retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55613.1.S1_at--1092--4551Chr01:38474470..38474494 (25 bp)
GCGCTGCCGCTTGAGAACCGACGTG
LOC_Os01g65694
Os.55613.1.S1_at--1049--8891Chr01:38474481..38474505 (25 bp)
TGAGAACCGACGTGCGCTCGCGTTT
LOC_Os01g65694
Os.55613.1.S1_at--706--7291Chr01:38474492..38474516 (25 bp)
GTGCGCTCGCGTTTTGTCACCGTCG
LOC_Os01g65694
Os.55613.1.S1_at--1106--3991Chr01:38474550..38474574 (25 bp)
CGTCGCCCGAGAACCGTCGTCGGAG
LOC_Os01g65694
Os.55613.1.S1_at--841--9771Chr01:38474718..38474742 (25 bp)
TAAGTGCGGCGTTTAAACGCTGGCG
LOC_Os01g65694
Os.55613.1.S1_at--27--2612Chr01:38474733..38474757 (25 bp)
AACGCTGGCGGTAGGTTAAGAAGCA
LOC_Os01g65694
Os.55613.1.S1_at--806--2931Chr01:38474775..38474799 (25 bp)
AATGGACTTCTTAACCAACCTCAAG
LOC_Os01g65694
Os.55613.1.S1_at--190--9771Chr01:38474786..38474810 (25 bp)
TAACCAACCTCAAGCGAAAACGGAT
LOC_Os01g65694
Os.55613.1.S1_at--486--2571Chr01:38474804..38474828 (25 bp)
AACGGATTTTCACTTGTGGTCCTAG
LOC_Os01g65694
Os.55613.1.S1_at--1080--10371Chr01:38474810..38474834 (25 bp)
TTTTCACTTGTGGTCCTAGACTCAC
LOC_Os01g65694
Os.55613.1.S1_at--598--3711Chr01:38474825..38474849 (25 bp)
CTAGACTCACCGTCGGCGAAAATGA
LOC_Os01g65694
Target Sequence 
GCGCTGCCGCTTGAGAACCGACGTGCGCTCGCGTTTTGTCACCGTCGCCGCCACAAGCCGCTGCTGGAGCCACCGCGCGC
CGTCGCCCGAGAACCGTCGTCGGAGCTGCCGCCGCCGCCTGTGGGGAGTGAGTAGGAGGGTGCATCTGGAGGGAGGAAGA
GGAACAAGAGGATAAGGACTAGGTGGATAAGGAGTGGTGGGTGGTGATTTTTTAATGGGCGGTGATATTTTTAAGTGTGT
GATTTTTTTAAGTGCGGCGTTTAAACGCTGGCGGTAGGTTAAGAAGCAATAGGGTTATTTTTTGAAATGGACTTCTTAAC
CAACCTCAAGCGAAAACGGATTTTCACTTGTGGTCCTAGACTCACCGTCGGCGAAAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55613.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis