Browse Element(s) Details


OsAffx.9622.1.S1_at

Description tigr:9629.m06520
TID=OsAffx.9622.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=uncharacterized plant-specific domain TIGR01615, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6574011/11uncharacterized plant-specific domain TIGR01615 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65680Os.10240.1.S1_at11/111+38465963..38469488Catalytic LigB subunit of aromatic ring-opening dioxygenase family protein, expressed
LOC_Os01g65690Os.27629.1.S1_at11/111+38471634..384729904,5-DOPA dioxygenase extradiol, putative, expressed
LOC_Os01g65692Os.6626.1.S1_x_at1/111+38473872..38474647expressed protein
LOC_Os01g65694Os.55613.1.S1_at11/111+38473922..38474867expressed protein
LOC_Os01g65700Os.12038.1.S1_at11/111+38475533..38476487expressed protein
LOC_Os01g65710OsAffx.23928.1.S1_at11/111+38478214..38478891expressed protein
LOC_Os01g65720Os.15928.1.S1_at11/111+38480994..38483864glycosyl hydrolase family protein 43, putative, expressed
LOC_Os01g65730OsAffx.21821.1.S1_at11/111+38484404..38486621SET domain containing protein, expressed
LOC_Os01g65740OsAffx.9622.1.S1_at11/111+38491386..38493994uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os01g65750OsAffx.21820.1.S1_x_at10/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65750OsAffx.21820.1.S1_at9/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65750OsAffx.21820.2.S1_x_at3/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65760Os.34112.1.S1_at11/111+38499619..38501067retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g65770Os.55523.1.S1_at11/111+38518670..38519374expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9622.1.S1_at--724--1191Chr01:38492392..38492416 (25 bp)
AGTAGGCCATGGTGCTGACACGTCG
LOC_Os01g65740
OsAffx.9622.1.S1_at--1071--3991Chr01:38492421..38492445 (25 bp)
CGTCCAGGCTGATCGTTGACGTGGA
LOC_Os01g65740
OsAffx.9622.1.S1_at--732--10751Chr01:38492436..38492460 (25 bp)
TTGACGTGGATTTCCGGTCCCAGTT
LOC_Os01g65740
OsAffx.9622.1.S1_at--1007--7791Chr01:38492451..38492475 (25 bp)
GGTCCCAGTTCCAGCTGGCGAGGCC
LOC_Os01g65740
OsAffx.9622.1.S1_at--408--8371Chr01:38492660..38492684 (25 bp)
GGCGTGCAGGCATCAGCGCTGCCAC
LOC_Os01g65740
OsAffx.9622.1.S1_at--489--1031Chr01:38492789..38492813 (25 bp)
AGGTCAGGCCTCTCGGTGGAGCTAT
LOC_Os01g65740
OsAffx.9622.1.S1_at--465--9511Chr01:38492799..38492823 (25 bp)
TCTCGGTGGAGCTATCCGACTCCGG
LOC_Os01g65740
OsAffx.9622.1.S1_at--419--4491Chr01:38493407..38493680 (25 bp)
GCCGGTGAGTCCTCTACTATACTAT
LOC_Os01g65740
OsAffx.9622.1.S1_at--797--871Chr01:38493685..38493709 (25 bp)
ATGGCCCATTGCAGCTTTTGCAAGG
LOC_Os01g65740
OsAffx.9622.1.S1_at--81--291Chr01:38493909..38493933 (25 bp)
ATAGTAGGAGCCTCAACTGGGCCTC
LOC_Os01g65740
OsAffx.9622.1.S1_at--932--1931Chr01:38493924..38493948 (25 bp)
ACTGGGCCTCTATGGCTGGAAGAAG
LOC_Os01g65740
Target Sequence 
AGTAGGCCATGGTGCTGACACGTCGTCCACGTCCAGGCTGATCGTTGACGTGGATTTCCGGTCCCAGTTCCAGCTGGCGA
GGCCGGCCCCATGGTACGCCCACCTGTCGAGCCGGCTGCCGCCGGTGTTCGTGGGCCCGCCGGAGAAGCTGCGGCAGGCG
GTGGCGCTGCTGTGCATGGCGGCGCAGCGGTCGCTCCGGGAGAGCGGCCTGCACGTCCCGCCGTGGAGGCGGCCCAGCTA
CGTGCAGGCCAAGTGGCTCCCCTGCCGCGGCGTGCAGGCATCAGCGCTGCCACCGGGCGGCGAGTCCGCCGCGGCGGCGA
ACGGCGGCGATGGCCCGCGGGCGGTGGTCCAGTGGTCGGTGGGGAAGGAGAGGAGACGCCGTGGTGGTGGGCACCGGAGG
TCAGGCCTCTCGGTGGAGCTATCCGACTCCGGCGCCGGTGAGTCCTCTACTATACTATCCCCATGGCCCATTGCAGCTTT
TGCAAGGAGGAAGGAGAAAAAGGAAGTTGCAAAACATAGTAGGAGCCTCAACTGGGCCTCTATGGCTGGAAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis