Browse Element(s) Details


OsAffx.21820.2.S1_x_at

Description gb:NM_184275.1
DB_XREF= gi:34895629
GEN=OSJNBa0083M16.28
TID=OsAffx.21820.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0083M16.28 (OSJNBa0083M16.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g657503/11transposon protein, putative, unclassified
LOC_Os03g251501/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65690Os.27629.1.S1_at11/111+38471634..384729904,5-DOPA dioxygenase extradiol, putative, expressed
LOC_Os01g65692Os.6626.1.S1_x_at1/111+38473872..38474647expressed protein
LOC_Os01g65694Os.55613.1.S1_at11/111+38473922..38474867expressed protein
LOC_Os01g65700Os.12038.1.S1_at11/111+38475533..38476487expressed protein
LOC_Os01g65710OsAffx.23928.1.S1_at11/111+38478214..38478891expressed protein
LOC_Os01g65720Os.15928.1.S1_at11/111+38480994..38483864glycosyl hydrolase family protein 43, putative, expressed
LOC_Os01g65730OsAffx.21821.1.S1_at11/111+38484404..38486621SET domain containing protein, expressed
LOC_Os01g65740OsAffx.9622.1.S1_at11/111+38491386..38493994uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os01g65750OsAffx.21820.1.S1_x_at10/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65750OsAffx.21820.1.S1_at9/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65750OsAffx.21820.2.S1_x_at3/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65760Os.34112.1.S1_at11/111+38499619..38501067retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g65770Os.55523.1.S1_at11/111+38518670..38519374expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21820.2.S1_x_at--623--1773Chr05:25686859..25686883 (25 bp)
ACCTGGCGTCGCTAGCGCGCAAGTA
NONE
OsAffx.21820.2.S1_x_at--434--2812Chr01:38498526..38498550 (25 bp)
AAGTACGGGCCCATCATGTACCTCA
LOC_Os01g65750
OsAffx.21820.2.S1_x_at--105--415Chr09:9527135..9527158 (24 bp)
ATCATGTACCTCAAGATGGGCACCT
NONE
OsAffx.21820.2.S1_x_at--559--8351Chr01:1913426..1913488 (25 bp)
GGCGAGGGCTTTCTTGCCGGGCGGA
NONE
OsAffx.21820.2.S1_x_at--693--10551Chr01:1913416..1913478 (25 bp)
TTCTTGCCGGGCGGAGGCGTCATCC
NONE
OsAffx.21820.2.S1_x_at--386--1991Chr01:1913355..1913379 (25 bp)
ACTCCTGCTGGCCACACAAACAGGG
NONE
OsAffx.21820.2.S1_x_at--408--992Chr04:26961067..26961100 (25 bp)
AGGAGGAAGATCTGGCCTCGCCGCC
NONE
OsAffx.21820.2.S1_x_at--218--9171Chr01:1913249..1913273 (25 bp)
TGCCGCTGCCCTAGATCCCTAGTGT
NONE
OsAffx.21820.2.S1_x_at--286--9171Chr01:1913243..1913267 (25 bp)
TGCCCTAGATCCCTAGTGTCGCTTG
NONE
OsAffx.21820.2.S1_x_at--8--311Chr01:1913239..1913263 (25 bp)
CTAGATCCCTAGTGTCGCTTGCCTC
NONE
OsAffx.21820.2.S1_x_at--779--4931Chr01:1913199..1913223 (25 bp)
GCTTGTCCAGCTCTCGCTCTTGCAG
NONE
Target Sequence 
ACCTGGCGTCGCTAGCGCGCAAGTACGGGCCCATCATGTACCTCAAGATGGGCACCTGCGGCGTCGTCGCCGTGCGCGGC
GAGGGCTTTCTTGCCGGGCGGAGGCGTCATCCGCCGGCCGTCCCGTCGTCATCCCGCCGCCACCGACCACTCCTGCTGGC
CACACAAACAGGGGAGAAAGAGATGAGGGAGAGAGAAGGAGGAGGAAGATCTGGCCTCGCCGCCGCCGCTGCCGACCACT
CCCTCGACCGCCGCTGCCGCTGCCCTAGATCCCTAGTGTCGCTTGCCTCCCGTCGGTCGCCGCCGCTTGTCCAGCTCTCG
CTCTTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21820.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis