Browse Element(s) Details


Os.55523.1.S1_at

Description gb:AK108247.1
DB_XREF= gi:32993456
TID=Os.55523.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55523 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-H08, full insert sequence.
FL= gb:AK108247.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6577011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65740OsAffx.9622.1.S1_at11/111+38491386..38493994uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os01g65750OsAffx.21820.1.S1_x_at10/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65750OsAffx.21820.1.S1_at9/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65750OsAffx.21820.2.S1_x_at3/111+38496585..38498757transposon protein, putative, unclassified
LOC_Os01g65760Os.34112.1.S1_at11/111+38499619..38501067retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g65770Os.55523.1.S1_at11/111+38518670..38519374expressed protein
LOC_Os01g65780Os.5334.2.S1_a_at11/111+38523871..38529461secondary cell wall-related glycosyltransferase family 8, putative, expressed
LOC_Os01g65790Os.32182.1.S1_at8/111+38533801..38538532Pectinesterase family protein, expressed
LOC_Os01g65790OsAffx.1382.1.S1_x_at3/111+38533801..38538532Pectinesterase family protein, expressed
LOC_Os01g65800Os.35603.1.S1_at11/111+38539707..38543983expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55523.1.S1_at--592--3091Chr01:38518825..38518849 (25 bp)
AATACTCTAGGCGATTCACATGCGA
LOC_Os01g65770
Os.55523.1.S1_at--496--131Chr01:38518812..38518836 (25 bp)
ATTCACATGCGAGGTATTGCTCCAT
LOC_Os01g65770
Os.55523.1.S1_at--273--2853Chr10:5358482..5358502 (21 bp)
AAGTCTCCAACTGTGCCTTGTGAAT
NONE
Os.55523.1.S1_at--69--3833Chr10:5358482..5358506 (25 bp)
CTCCAACTGTGCCTTGTGAATGAAA
NONE
Os.55523.1.S1_at--599--7351Chr01:38518756..38518780 (25 bp)
GTGAATGAAAGTGTGCCCAAATGCA
LOC_Os01g65770
Os.55523.1.S1_at--260--4551Chr01:38518742..38518766 (25 bp)
GCCCAAATGCATGGGTTGGTGAGTT
LOC_Os01g65770
Os.55523.1.S1_at--886--10812Chr10:22375105..22375162 (25 bp)
TTGGTGAGTTGGTCTCTTAGGAGAT
NONE
Os.55523.1.S1_at--53--7172Chr10:22375149..22375173 (25 bp)
GTCTCTTAGGAGATAATCCATGTGA
NONE
Os.55523.1.S1_at--867--3032Chr10:22375163..22375369 (25 bp)
AATCCATGTGATGCACTGAGTTGAT
NONE
Os.55523.1.S1_at--362--5111Chr01:38518690..38518714 (25 bp)
GCACTGAGTTGATAATTGTCTTGAA
LOC_Os01g65770
Os.55523.1.S1_at--85--7151Chr01:38518673..38518697 (25 bp)
GTCTTGAATTTTCTATGTTGATTGG
LOC_Os01g65770
Target Sequence 
AATACTCTAGGCGATTCACATGCGAGGTATTGCTCCATCTCCAATACTCCAAGTCTCCAACTGTGCCTTGTGAATGAAAG
TGTGCCCAAATGCATGGGTTGGTGAGTTGGTCTCTTAGGAGATAATCCATGTGATGCACTGAGTTGATAATTGTCTTGAA
TTTTCTATGTTGATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis