Browse Element(s) Details


OsAffx.1382.1.S1_x_at

Description gb:NM_187403.1
DB_XREF= gi:34901891
GEN=OSJNBa0036M16.12
TID=OsAffx.1382.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0036M16.12 (OSJNBa0036M16.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g657903/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65770Os.55523.1.S1_at11/111+38518670..38519374expressed protein
LOC_Os01g65780Os.5334.2.S1_a_at11/111+38523871..38529461secondary cell wall-related glycosyltransferase family 8, putative, expressed
LOC_Os01g65790Os.32182.1.S1_at8/111+38533801..38538532Pectinesterase family protein, expressed
LOC_Os01g65790OsAffx.1382.1.S1_x_at3/111+38533801..38538532Pectinesterase family protein, expressed
LOC_Os01g65800Os.35603.1.S1_at11/111+38539707..38543983expressed protein
LOC_Os01g65810OsAffx.11747.2.A1_at11/111+38545985..38547304hypothetical protein
LOC_Os01g65820OsAffx.23929.1.S1_at11/111+38547994..38548583hypothetical protein
LOC_Os01g65830Os.9534.1.S1_at11/111+38551270..38552844Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os01g65840Os.34903.1.S1_at11/111+38553274..38555289pentatricopeptide, putative, expressed
LOC_Os01g65850OsAffx.23930.1.S1_at11/111+38555661..38564077Type III restriction enzyme, res subunit family protein

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Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1382.1.S1_x_at--375--7951Chr07:19950824..19950848 (25 bp)
GGATCTAGTCGTCGTCGTCGCGAAT
NONE
OsAffx.1382.1.S1_x_at--695--4591Chr07:19950843..19950867 (25 bp)
GCGAATCCATCGTCGCCGCTGGAGG
NONE
OsAffx.1382.1.S1_x_at--249--7811Chr07:19950991..19951015 (25 bp)
GGTCGTCGCCGAGTCATCGCTGTTG
NONE
OsAffx.1382.1.S1_x_at--560--7231Chr07:19951023..19951047 (25 bp)
GTCGCCGAGTCATCGCTATCGTGGG
NONE
OsAffx.1382.1.S1_x_at--1123--7691Chr07:19951063..19951087 (25 bp)
GGGTCATCGCTGGTCATCGCCTACT
NONE
OsAffx.1382.1.S1_x_at--629--3712Chr07:19951083..19951107 (25 bp)
CTACTCCCAACGACGAGGGCGAGGG
NONE
OsAffx.1382.1.S1_x_at--407--2451Chr07:19951118..19951142 (25 bp)
AAAATATGGTGTGGTAGCGGTGTCC
NONE
OsAffx.1382.1.S1_x_at--32--6972Chr07:19951131..19951155 (25 bp)
GTAGCGGTGTCCATGGGACACTCAC
NONE
OsAffx.1382.1.S1_x_at--350--8712Chr07:19951138..19951162 (25 bp)
TGTCCATGGGACACTCACCTAGCCA
NONE
OsAffx.1382.1.S1_x_at--620--9991Chr07:19951157..19951181 (25 bp)
TAGCCATGCCCTCTGCAATGCGTCT
NONE
OsAffx.1382.1.S1_x_at--988--3011Chr07:19951173..19951197 (25 bp)
AATGCGTCTCCTGGTTCGGTTTCAC
NONE
Target Sequence 
GGATCTAGTCGTCGTCGTCGCGAATCCATCGTCGCCGCTGGAGGTCGCGTGCCACGCCACCGGATCCATCTCTCTCCTCT
CTCTCTCTCTCTCTCTCGTCGCGGGGTCGTCGCCAGAGGCCGTGTGCCGCGCCGCCACCCCTCTTCCTCCGCTCGTCGCC
GTCGCGGGGTCGTCGCCGAGTCATCGCTGTTGCGGGGTCGTCGCCGAGTCATCGCTATCGTGGGGTCGTCGCCGTGGCGG
GGTCATCGCTGGTCATCGCCTACTCCCAACGACGAGGGCGAGGGGTGAAACGGTAAAATATGGTGTGGTAGCGGTGTCCA
TGGGACACTCACCTAGCCATGCCCTCTGCAATGCGTCTCCTGGTTCGGTTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1382.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis