Browse Element(s) Details


Os.9534.1.S1_at

Description gb:AK120809.1
DB_XREF= gi:37990432
TID=Os.9534.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9534 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative stearoyl-acyl carrier protein desaturase (P0018C10.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014E24, full insert sequence.
FL= gb:AK120809.1 gb:AK101524.1 gb:AK059526.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6583011/11Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os05g168241/11SHR5-receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65780Os.5334.2.S1_a_at11/111+38523871..38529461secondary cell wall-related glycosyltransferase family 8, putative, expressed
LOC_Os01g65790Os.32182.1.S1_at8/111+38533801..38538532Pectinesterase family protein, expressed
LOC_Os01g65790OsAffx.1382.1.S1_x_at3/111+38533801..38538532Pectinesterase family protein, expressed
LOC_Os01g65800Os.35603.1.S1_at11/111+38539707..38543983expressed protein
LOC_Os01g65810OsAffx.11747.2.A1_at11/111+38545985..38547304hypothetical protein
LOC_Os01g65820OsAffx.23929.1.S1_at11/111+38547994..38548583hypothetical protein
LOC_Os01g65830Os.9534.1.S1_at11/111+38551270..38552844Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os01g65840Os.34903.1.S1_at11/111+38553274..38555289pentatricopeptide, putative, expressed
LOC_Os01g65850OsAffx.23930.1.S1_at11/111+38555661..38564077Type III restriction enzyme, res subunit family protein
LOC_Os01g65860Os.29810.1.S1_at11/111+38565328..38567154ANTH domain containing protein, expressed
LOC_Os01g65870OsAffx.2418.1.S1_at9/111+38572676..38573471hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006631biological_processfatty acid metabolism
GO:0006633biological_processfatty acid biosynthesis
GO:0006952biological_processdefense response
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0008610biological_processlipid biosynthesis
GO:0009695biological_processjasmonic acid biosynthesis
GO:0042742biological_processdefense response to bacteria
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004768molecular_functionstearoyl-CoA 9-desaturase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0045300molecular_functionacyl-[acyl-carrier protein] desaturase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9534.1.S1_at--811--5651Chr01:38552266..38552290 (25 bp)
GACATGATGCACAAGCGGATCACCA
LOC_Os01g65830
Os.9534.1.S1_at--1142--9351Chr01:38552399..38552423 (25 bp)
TCGAGTTCCTCGTCAAGCGGTGGAA
LOC_Os01g65830
Os.9534.1.S1_at--327--5311Chr01:38552553..38552577 (25 bp)
GAAGGTCAAGTTCAGCTGGATCTAT
LOC_Os01g65830
Os.9534.1.S1_at--624--7151Chr01:38552593..38552617 (25 bp)
GTCTAGTTTAACTTGTCTTGGTTGA
LOC_Os01g65830
Os.9534.1.S1_at--116--9011Chr01:38552615..38552639 (25 bp)
TGAATTCTGAATTCCCAGTCCTAGA
LOC_Os01g65830
Os.9534.1.S1_at--522--10631Chr01:38552626..38552650 (25 bp)
TTCCCAGTCCTAGATGATCATGCCA
LOC_Os01g65830
Os.9534.1.S1_at--800--6431Chr01:38552641..38552665 (25 bp)
GATCATGCCATTTCGTTATCATCTC
LOC_Os01g65830
Os.9534.1.S1_at--784--9392Chr05:9573904..9573923 (20 bp)
TCGTTATCATCTCTGTTCTTGTGTT
LOC_Os05g16824
Os.9534.1.S1_at--916--1211Chr01:38552705..38552729 (25 bp)
AGTTAATGGTGCTTTGATCTTGGAA
LOC_Os01g65830
Os.9534.1.S1_at--745--8471Chr01:38552733..38552757 (25 bp)
TGGCGTTGATGTATTTTCTGGTATC
LOC_Os01g65830
Os.9534.1.S1_at--113--6491Chr01:38552767..38552791 (25 bp)
GATAGTTTGGTTTCTTTTCACATTT
LOC_Os01g65830
Target Sequence 
GACATGATGCACAAGCGGATCACCATGCCCGCGCACCTCATGCACGACGGCCGCGACATGAACCTGTTCGACCACTTCGC
CGCCGTGGCGCAGCGCCTCAACGTCTACACCGCGCGCGACTACGCCGACATCGTCGAGTTCCTCGTCAAGCGGTGGAAGC
TGGAGACCCTGGAGACTGGGCTCTCCGGCGAGGGCCGGAGGGCCCGGGACTTCGTGTGCGGGCTCGCGAAGAGGATGCGG
CGGGCCGCGGAGCGGGCTGAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATAGGGA
AGTGATTGTCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGATGATCATGCCATTTCGTTATCATCTC
TGTTCTTGTGTTCTCTTTGCAATGCAGTAAATTGGTAATAGTTAATGGTGCTTTGATCTTGGAAATTTGGCGTTGATGTA
TTTTCTGGTATCATTAGTGAAGATAGTTTGGTTTCTTTTCACATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9534.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis