Browse Element(s) Details


OsAffx.23930.1.S1_at

Description tigr:9629.m06530
TID=OsAffx.23930.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SNF2 family N-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6585011/11Type III restriction enzyme, res subunit family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65790Os.32182.1.S1_at8/111+38533801..38538532Pectinesterase family protein, expressed
LOC_Os01g65790OsAffx.1382.1.S1_x_at3/111+38533801..38538532Pectinesterase family protein, expressed
LOC_Os01g65800Os.35603.1.S1_at11/111+38539707..38543983expressed protein
LOC_Os01g65810OsAffx.11747.2.A1_at11/111+38545985..38547304hypothetical protein
LOC_Os01g65820OsAffx.23929.1.S1_at11/111+38547994..38548583hypothetical protein
LOC_Os01g65830Os.9534.1.S1_at11/111+38551270..38552844Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os01g65840Os.34903.1.S1_at11/111+38553274..38555289pentatricopeptide, putative, expressed
LOC_Os01g65850OsAffx.23930.1.S1_at11/111+38555661..38564077Type III restriction enzyme, res subunit family protein
LOC_Os01g65860Os.29810.1.S1_at11/111+38565328..38567154ANTH domain containing protein, expressed
LOC_Os01g65870OsAffx.2418.1.S1_at9/111+38572676..38573471hypothetical protein
LOC_Os01g65880Os.4655.1.S1_at11/111+38580899..38584499MtN3/saliva family protein, expressed
LOC_Os01g65880Os.51530.1.S1_at11/111+38580899..38584499MtN3/saliva family protein, expressed
LOC_Os01g65890Os.25060.1.S1_at11/111+38584858..38588284DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os01g65900Os.9902.1.S1_at10/111+38588715..38592358GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0008283biological_processcell proliferation
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0016481biological_processnegative regulation of transcription
GO:0016568biological_processchromatin modification
GO:0048364biological_processroot development
GO:0003677molecular_functionDNA binding
GO:0003678molecular_functionDNA helicase activity
GO:0003682molecular_functionchromatin binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
GO:0016887molecular_functionATPase activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23930.1.S1_at--863--6391Chr01:38556222..38556246 (25 bp)
GATCGGGCAGACAAGACCAGTGGTT
LOC_Os01g65850
OsAffx.23930.1.S1_at--761--6431Chr01:38556033..38556057 (25 bp)
GATCAGTGCAACATCCATCCATTAT
LOC_Os01g65850
OsAffx.23930.1.S1_at--1130--5951Chr01:38555993..38556017 (25 bp)
GAGAATCTCCTCAAGTTAGACCCTT
LOC_Os01g65850
OsAffx.23930.1.S1_at--227--6791Chr01:38555979..38556003 (25 bp)
GTTAGACCCTTCCACTGGTGAGAAA
LOC_Os01g65850
OsAffx.23930.1.S1_at--567--351Chr01:38555941..38555965 (25 bp)
ATAACGGTTATCTTGGCAGCATTGT
LOC_Os01g65850
OsAffx.23930.1.S1_at--399--8911Chr01:38555917..38555941 (25 bp)
TGAGCTTTGCTCATGGCGTCGAGGA
LOC_Os01g65850
OsAffx.23930.1.S1_at--1114--9451Chr01:38555862..38555886 (25 bp)
TCTGAAAGTTCTCAAGCCTGCTACT
LOC_Os01g65850
OsAffx.23930.1.S1_at--98--3471Chr01:38555763..38555787 (25 bp)
CAGTGATGATATGTATGCCCCGGAA
LOC_Os01g65850
OsAffx.23930.1.S1_at--1091--5291Chr01:38555741..38555765 (25 bp)
GAAGGTTCGTCGACTTCCGAATTCA
LOC_Os01g65850
OsAffx.23930.1.S1_at--1--3151Chr01:38555722..38555746 (25 bp)
AATTCAGCAGTTCGTCCTCCGATGA
LOC_Os01g65850
OsAffx.23930.1.S1_at--717--671Chr01:38555698..38555722 (25 bp)
ATGAAACTGACAGCGCTCTGCAGCT
LOC_Os01g65850
Target Sequence 
GATCGGGCAGACAAGACCAGTGGTTGTTTACCAACTCATTACAAAGTGTTCTGTCGAGGAAAAGATACTGCAGAAGTCAA
AGCAGAAGTTGGCCATCGAAAATATGTTGATGAACTCTTCCAAGAAGCCAAGTGCTGATGAGTTGCAGTCTATATTACTC
CATGGAGCAAAGACAATTGTGGACAGGAAGATCAGTGCAACATCCATCCATTATGACAATGAAGCCATTGAGAATCTCCT
CAAGTTAGACCCTTCCACTGGTGAGAAATGCTCGTCGGATGATAACGGTTATCTTGGCAGCATTGTGAGCTTTGCTCATG
GCGTCGAGGATGAAGCACCTTCTTCCCCAAAGGTTGAGGATCTGAAAGTTCTCAAGCCTGCTACTCCCAAGGTTGATCTC
GGCCGTGGGAAGAGGCAAAGGAAAGTCGTGAACTACGCTGACGAGGTTGAGAATGAAGACAGTGATGATATGTATGCCCC
GGAAGGTTCGTCGACTTCCGAATTCAGCAGTTCGTCCTCCGATGATGAAACTGACAGCGCTCTGCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis