Browse Element(s) Details


Os.4655.1.S1_at

Description gb:AK067960.1
DB_XREF= gi:32977978
TID=Os.4655.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4655 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0018C10.36 (P0018C10.36), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123F10, full insert sequence.
FL= gb:AK099531.1 gb:AK067960.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6588011/11MtN3/saliva family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65850OsAffx.23930.1.S1_at11/111+38555661..38564077Type III restriction enzyme, res subunit family protein
LOC_Os01g65860Os.29810.1.S1_at11/111+38565328..38567154ANTH domain containing protein, expressed
LOC_Os01g65870OsAffx.2418.1.S1_at9/111+38572676..38573471hypothetical protein
LOC_Os01g65880Os.4655.1.S1_at11/111+38580899..38584499MtN3/saliva family protein, expressed
LOC_Os01g65880Os.51530.1.S1_at11/111+38580899..38584499MtN3/saliva family protein, expressed
LOC_Os01g65890Os.25060.1.S1_at11/111+38584858..38588284DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os01g65900Os.9902.1.S1_at10/111+38588715..38592358GRAS family transcription factor containing protein, expressed
LOC_Os01g65910Os.29056.1.S1_s_at11/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.32260.1.S1_at11/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.32259.1.S1_x_at8/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.20135.1.S1_x_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910Os.57029.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.20135.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.1820.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65920Os.12329.1.S1_at11/111+38601921..38605879F-box protein AtFBL5, putative, expressed
LOC_Os01g65920Os.51686.1.S1_at1/111+38601921..38605879F-box protein AtFBL5, putative, expressed
LOC_Os01g65940OsAffx.11748.1.S1_at11/111+38609421..38613643Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4655.1.S1_at--939--531Chr01:38583958..38583977 (20 bp)
ATCGCGATCCCCAATGGATGCGGGA
LOC_Os01g65880
Os.4655.1.S1_at--1148--631Chr01:38583992..38584016 (25 bp)
ATGCAGCTGATCCTCTACGCGATCT
LOC_Os01g65880
Os.4655.1.S1_at--341--3711Chr01:38584006..38584030 (25 bp)
CTACGCGATCTACCGGAACCACAAG
LOC_Os01g65880
Os.4655.1.S1_at--45--5611Chr01:38584187..38584211 (25 bp)
GACAAGGTCGCCAGCCAGGTGTGAC
LOC_Os01g65880
Os.4655.1.S1_at--1027--5631Chr01:38584241..38584265 (25 bp)
GACACGCACGGAAGAATGCAGCTTA
LOC_Os01g65880
Os.4655.1.S1_at--550--71Chr01:38584310..38584334 (25 bp)
ATTGCTGTCGCCTTTCTTGATTTTT
LOC_Os01g65880
Os.4655.1.S1_at--345--10572Chr06:27818761..27819094 (25 bp)
TTCTTTTTACTGATCTCTGTCTCTC
NONE
Os.4655.1.S1_at--118--731Chr01:38584376..38584400 (25 bp)
ATGATACTGTATTTCCCGTTCTGTT
LOC_Os01g65880
Os.4655.1.S1_at--1143--4231Chr01:38584391..38584415 (25 bp)
CCGTTCTGTTCTTGCAAGCGTGAAG
LOC_Os01g65880
Os.4655.1.S1_at--721--2671Chr01:38584406..38584430 (25 bp)
AAGCGTGAAGCCATTTCCCATTTTT
LOC_Os01g65880
Os.4655.1.S1_at--841--10371Chr01:38584433..38584457 (25 bp)
TTCTACCGTACGATACTGTATGCCC
LOC_Os01g65880
Target Sequence 
ATCGCGATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTACGCGATCTACCGGAACCACAAGGG
GGCCACGCCGGCGGCGGCGGCCGGGAAGGGGGACGCCGCCGACGAGGTGGAGGACGCGAAGAAGGCGGCCNCCGCGGTGG
AGATGGCCGACGCCAAGACCAACAAGGTCGTCGCCGACGACGCCGACGCCGACGCCGATGGCAAGTCGGCGGACGACAAG
GTCGCCAGCCAGGTGTGACGCGTTCGGGGCCCCGCACGGCGCCCGGCCGACACGCACGGAAGAATGCAGCTTAAAGCATT
GTTGCTGCTGCTGGATTGATTAGTGGTTAAGCAGATTATTGCTGTCGCCTTTCTTGATTTTTCTTTTTACTGATCTCTGT
CTCTCGTGCCCGATCGAGAGAGTATGATACTGTATTTCCCGTTCTGTTCTTGCAAGCGTGAAGCCATTTCCCATTTTTTT
TTCTACCGTACGATACTGTATGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4655.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis