Browse Element(s) Details


Os.25060.1.S1_at

Description gb:NM_190169.1
DB_XREF= gi:34907421
GEN=P0018C10.37
TID=Os.25060.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25060 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0018C10.37 (P0018C10.37), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0018C10.37 (P0018C10.37), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6589011/11DNA repair metallo-beta-lactamase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65850OsAffx.23930.1.S1_at11/111+38555661..38564077Type III restriction enzyme, res subunit family protein
LOC_Os01g65860Os.29810.1.S1_at11/111+38565328..38567154ANTH domain containing protein, expressed
LOC_Os01g65870OsAffx.2418.1.S1_at9/111+38572676..38573471hypothetical protein
LOC_Os01g65880Os.4655.1.S1_at11/111+38580899..38584499MtN3/saliva family protein, expressed
LOC_Os01g65880Os.51530.1.S1_at11/111+38580899..38584499MtN3/saliva family protein, expressed
LOC_Os01g65890Os.25060.1.S1_at11/111+38584858..38588284DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os01g65900Os.9902.1.S1_at10/111+38588715..38592358GRAS family transcription factor containing protein, expressed
LOC_Os01g65910Os.29056.1.S1_s_at11/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.32260.1.S1_at11/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.32259.1.S1_x_at8/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.20135.1.S1_x_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910Os.57029.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.20135.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.1820.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65920Os.12329.1.S1_at11/111+38601921..38605879F-box protein AtFBL5, putative, expressed
LOC_Os01g65920Os.51686.1.S1_at1/111+38601921..38605879F-box protein AtFBL5, putative, expressed
LOC_Os01g65940OsAffx.11748.1.S1_at11/111+38609421..38613643Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0006281biological_processDNA repair
GO:0006310biological_processDNA recombination
GO:0003910molecular_functionDNA ligase (ATP) activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25060.1.S1_at--127--1311Chr01:38587684..38587708 (25 bp)
AGATGAGGACCCGTCTTGTCAGTGT
LOC_Os01g65890
Os.25060.1.S1_at--1049--10771Chr01:38587699..38587723 (25 bp)
TTGTCAGTGTGCTGCATCCCCAAGG
LOC_Os01g65890
Os.25060.1.S1_at--8--1431Chr01:38587729..38587753 (25 bp)
AGAAAGTCGCTCAATCCTGTCTTTA
LOC_Os01g65890
Os.25060.1.S1_at--598--9971Chr01:38587752..38587776 (25 bp)
TACCTATTGGTGAGTGCAGTTTGTC
LOC_Os01g65890
Os.25060.1.S1_at--1040--10771Chr01:38587772..38587796 (25 bp)
TTGTCACCGGTGGTTGATAACCCTA
LOC_Os01g65890
Os.25060.1.S1_at--894--5351Chr01:38587886..38587910 (25 bp)
GAAGATGATTGTCAGCGTGCTGCAT
LOC_Os01g65890
Os.25060.1.S1_at--772--5511Chr01:38587925..38587949 (25 bp)
GAAAAACTCTCAATCCGGTCTTCAC
LOC_Os01g65890
Os.25060.1.S1_at--489--7071Chr01:38587969..38587993 (25 bp)
GTCACCGGTGGCTGATAAACCTGAA
LOC_Os01g65890
Os.25060.1.S1_at--1144--6971Chr01:38588091..38588115 (25 bp)
GTACCTTGTGCGTTACTGGATCATC
LOC_Os01g65890
Os.25060.1.S1_at--457--1271Chr01:38588150..38588174 (25 bp)
AGATCAAGGAATGTCCCTGTCCCAC
LOC_Os01g65890
Os.25060.1.S1_at--827--9311Chr01:38588186..38588210 (25 bp)
TCCCTTGTTGGACTTTTGGAATCCA
LOC_Os01g65890
Target Sequence 
AGATGAGGACCCGTCTTGTCAGTGTGCTGCATCCCCAAGGCAATTAGAAAGTCGCTCAATCCTGTCTTTACCTATTGGTG
AGTGCAGTTTGTCACCGGTGGTTGATAACCCTAAAAAGTCTGAAGTTGTTATAGAGTCAGAATCAACAAATCATGCTGAA
AGTTCAAACCTTTGCATGGTCAGAAGGGGTTATTCAGGATCTGAAGATGATTGTCAGCGTGCTGCATCCCCAAGGCAATT
AGAAAAACTCTCAATCCGGTCTTCACCTATTGGTGAGTGCAGTTTGTCACCGGTGGCTGATAAACCTGAAAAGTCTGAAG
TTGTTATAGAGTCAGAATCAACAAATCTTGCTGAAAGTTCAAACCTTTGCATGGTCAGAGGAGAAGAAACAACAGATTGT
GAAAGGGGTACCTTGTGCGTTACTGGATCATCGAAATGCTTGAATGCAAGTTTGAAGAGGCTGTACAGATCAAGGAATGT
CCCTGTCCCACGACCTCTCCCGTCCCTTGTTGGACTTTTGGAATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis