Browse Element(s) Details


Os.9902.1.S1_at

Description gb:AK067457.1
DB_XREF= gi:32977475
TID=Os.9902.1
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.9902 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) scarecrow-like protein (P0018C10.38), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106L10, full insert sequence.
FL= gb:AK060833.1 gb:AK067457.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6590010/11GRAS family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65850OsAffx.23930.1.S1_at11/111+38555661..38564077Type III restriction enzyme, res subunit family protein
LOC_Os01g65860Os.29810.1.S1_at11/111+38565328..38567154ANTH domain containing protein, expressed
LOC_Os01g65870OsAffx.2418.1.S1_at9/111+38572676..38573471hypothetical protein
LOC_Os01g65880Os.4655.1.S1_at11/111+38580899..38584499MtN3/saliva family protein, expressed
LOC_Os01g65880Os.51530.1.S1_at11/111+38580899..38584499MtN3/saliva family protein, expressed
LOC_Os01g65890Os.25060.1.S1_at11/111+38584858..38588284DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os01g65900Os.9902.1.S1_at10/111+38588715..38592358GRAS family transcription factor containing protein, expressed
LOC_Os01g65910Os.29056.1.S1_s_at11/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.32260.1.S1_at11/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.32259.1.S1_x_at8/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.20135.1.S1_x_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910Os.57029.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.20135.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.1820.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65920Os.12329.1.S1_at11/111+38601921..38605879F-box protein AtFBL5, putative, expressed
LOC_Os01g65920Os.51686.1.S1_at1/111+38601921..38605879F-box protein AtFBL5, putative, expressed
LOC_Os01g65940OsAffx.11748.1.S1_at11/111+38609421..38613643Protein kinase domain containing protein, expressed
LOC_Os01g65950NANA1+38614801..38615042hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0045449biological_processregulation of transcription
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9902.1.S1_at--1021--1891Chr01:38589391..38589415 (25 bp)
ACTGGACGCGACACTTCCAAGGGAA
LOC_Os01g65900
Os.9902.1.S1_at--96--1631Chr01:38589344..38589368 (25 bp)
AGCGGCAATGTCTTGCTCGTGAAAT
LOC_Os01g65900
Os.9902.1.S1_at--1009--5591Chr01:38589324..38589348 (25 bp)
GAAATTGTCAACATCTTGGCTTGCG
LOC_Os01g65900
Os.9902.1.S1_at--817--2091Chr01:38589314..38589338 (25 bp)
ACATCTTGGCTTGCGAAGGTCCTGA
LOC_Os01g65900
Os.9902.1.S1_at--1075--2891NONE
AAGGTCCTGATCGTGTGGAGAGATA
NONE
Os.9902.1.S1_at--43--4911Chr01:38589117..38589141 (25 bp)
GCTTCACACCATGCCCATTTAGTAG
LOC_Os01g65900
Os.9902.1.S1_at--248--10431Chr01:38589099..38589123 (25 bp)
TTAGTAGCAATGTCATCAGCGGGAT
LOC_Os01g65900
Os.9902.1.S1_at--887--6391Chr01:38589072..38589096 (25 bp)
GATCGTTACTGAAGTCGTACTGTGA
LOC_Os01g65900
Os.9902.1.S1_at--507--3591Chr01:38588943..38588967 (25 bp)
CATTAGTCTTGCTGTTATTTAGGAG
LOC_Os01g65900
Os.9902.1.S1_at--31--5451Chr01:38588882..38588906 (25 bp)
GAACTTGTCAACTGATCTTACCTAA
LOC_Os01g65900
Os.9902.1.S1_at--61--9771Chr01:38588860..38588884 (25 bp)
TAATCGTAGATGTCTGCTTGTCAGA
LOC_Os01g65900
Target Sequence 
ACTGGACGCGACACTTCCAAGGGAAAGTCCGGATAGAATGAATGTGGAGCGGCAATGTCTTGCTCGTGAAATTGTCAACA
TCTTGGCTTGCGAAGGTCCTGATCGTGTGGAGAGATATGAAGTTGCTGGAAAATGGAGGGCAAGAATGACAATGGCTGGC
TTCACACCATGCCCATTTAGTAGCAATGTCATCAGCGGGATAAGATCGTTACTGAAGTCGTACTGTGACAGATACAAGTT
CGAGGAGGACCATGGGGGACTTCACTTCGGCTGGGGAGAGAAAACTCTAATCGTCTCCTCCGCATGGCAATAGAGCTTAC
AGAATGAGTTGGCATTAGTCTTGCTGTTATTTAGGAGCATCTGATGCAGAGACTGTAAAAAATGTGAACCNCTGAACTTG
TCAACTGATCTTACCTAATCGTAGATGTCTGCTTGTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis