Browse Element(s) Details


OsAffx.11748.1.S1_at

Description tigr:9629.m06539
TID=OsAffx.11748.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Pto-like serinethreonine kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6594011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65880Os.4655.1.S1_at11/111+38580899..38584499MtN3/saliva family protein, expressed
LOC_Os01g65880Os.51530.1.S1_at11/111+38580899..38584499MtN3/saliva family protein, expressed
LOC_Os01g65890Os.25060.1.S1_at11/111+38584858..38588284DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os01g65900Os.9902.1.S1_at10/111+38588715..38592358GRAS family transcription factor containing protein, expressed
LOC_Os01g65910Os.29056.1.S1_s_at11/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.32260.1.S1_at11/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.32259.1.S1_x_at8/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.20135.1.S1_x_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910Os.57029.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.20135.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.1820.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65920Os.12329.1.S1_at11/111+38601921..38605879F-box protein AtFBL5, putative, expressed
LOC_Os01g65920Os.51686.1.S1_at1/111+38601921..38605879F-box protein AtFBL5, putative, expressed
LOC_Os01g65940OsAffx.11748.1.S1_at11/111+38609421..38613643Protein kinase domain containing protein, expressed
LOC_Os01g65950NANA1+38614801..38615042hypothetical protein
LOC_Os01g65960NANA1+38617371..38617718thioesterase family protein, expressed
LOC_Os01g65970OsAffx.11749.1.S1_at11/111+38618659..38619470Transcription factor HBP-1b, putative
LOC_Os01g65970OsAffx.11749.1.S1_x_at10/111+38618659..38619470Transcription factor HBP-1b, putative
LOC_Os01g65970OsAffx.6141.1.S1_x_at7/111+38618659..38619470Transcription factor HBP-1b, putative
LOC_Os01g65980NANA1+38624337..38624765retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g65986Os.49295.1.S1_at11/111+38626848..38632491Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65992OsAffx.23931.1.S1_x_at11/111+38632673..38633575expressed protein
LOC_Os01g65992Os.55676.1.S1_at11/111+38632673..38633575expressed protein
LOC_Os01g66000OsAffx.23932.1.S1_at11/111+38633605..38634552expressed protein
LOC_Os01g66010Os.50896.1.S1_at11/111+38637437..38640480amino acid carrier, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11748.1.S1_at--1118--7991Chr01:38610979..38611003 (25 bp)
GGATGGCCAGGTCATAGCAGCTAAA
LOC_Os01g65940
OsAffx.11748.1.S1_at--512--7591Chr01:38610931..38610955 (25 bp)
GGGCTATACTGAGTTCTTCTCTGAA
LOC_Os01g65940
OsAffx.11748.1.S1_at--616--9171Chr01:38610889..38610913 (25 bp)
TGCCCGGCACCGAAATATTGTCATG
LOC_Os01g65940
OsAffx.11748.1.S1_at--255--3031Chr01:38610803..38610827 (25 bp)
AATCCCTTGAGTGGCATTTATTTGG
LOC_Os01g65940
OsAffx.11748.1.S1_at--301--171Chr01:38610247..38610271 (25 bp)
ATTATTGTCAGATACTTGGCTCCCG
LOC_Os01g65940
OsAffx.11748.1.S1_at--516--2071Chr01:38610234..38610258 (25 bp)
ACTTGGCTCCCGAATATGCTGAATA
LOC_Os01g65940
OsAffx.11748.1.S1_at--568--7671Chr01:38610172..38610196 (25 bp)
GGGATTGTTCTTTTCCAGCTGATAT
LOC_Os01g65940
OsAffx.11748.1.S1_at--1087--1591Chr01:38610160..38610180 (21 bp)
AGCTGATATCTGGTCGCAAGGCTGA
LOC_Os01g65940
OsAffx.11748.1.S1_at--897--5431Chr01:38609997..38610021 (25 bp)
GAACCTTTGGTCGAGAGTCTTGCAC
LOC_Os01g65940
OsAffx.11748.1.S1_at--782--3411Chr01:38609876..38609900 (25 bp)
CAGAACAGCGGCCTTCTATGGGAGA
LOC_Os01g65940
OsAffx.11748.1.S1_at--662--6151Chr01:38609853..38609877 (25 bp)
GAGGTTGTTCGTCTTATTGAGTCAG
LOC_Os01g65940
Target Sequence 
GGATGGCCAGGTCATAGCAGCTAAAGTACGCAAGGAAGCAAGCTCACAGGGCTATACTGAGTTCTTCTCTGAAGTACAAG
TTCTCAGCTTTGCCCGGCACCGAAATATTGTCATGCTGCTTGGGTATTGTTGCAAAGAAAGCTACAACATTTTGGTGTAT
GAGTACATATGCAACAAATCCCTTGAGTGGCATTTATTTGGTCTAACAGTACCAGTATTTCTTGTCATTATTGTCAGATA
CTTGGCTCCCGAATATGCTGAATATGGCATAGTTTCTGTCAGAACAGATGTTTATGCCTTTGGGATTGTTCTTTTCCAGC
TGATATCTGGTCGCAAGGCTGAACCTTTGGTCGAGAGTCTTGCACTACATGAACTAATTGATGAGCGCATTGCAGAAACA
TACGATACGTATGGGCTGTATCATCTAGCAAGAGCTGCATATCTTTGTGTCAGGATAAACCCAGAACAGCGGCCTTCTAT
GGGAGAGGTTGTTCGTCTTATTGAGTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11748.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis