Browse Element(s) Details


Os.12329.1.S1_at

Description gb:AK102849.1
DB_XREF= gi:32988058
TID=Os.12329.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12329 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0018C10.44 (P0018C10.44), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033110C14, full insert sequence.
FL= gb:AK102849.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6592011/11F-box protein AtFBL5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65880Os.4655.1.S1_at11/111+38580899..38584499MtN3/saliva family protein, expressed
LOC_Os01g65880Os.51530.1.S1_at11/111+38580899..38584499MtN3/saliva family protein, expressed
LOC_Os01g65890Os.25060.1.S1_at11/111+38584858..38588284DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os01g65900Os.9902.1.S1_at10/111+38588715..38592358GRAS family transcription factor containing protein, expressed
LOC_Os01g65910Os.29056.1.S1_s_at11/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.32260.1.S1_at11/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.32259.1.S1_x_at8/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.20135.1.S1_x_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910Os.57029.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.20135.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.1820.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65920Os.12329.1.S1_at11/111+38601921..38605879F-box protein AtFBL5, putative, expressed
LOC_Os01g65920Os.51686.1.S1_at1/111+38601921..38605879F-box protein AtFBL5, putative, expressed
LOC_Os01g65940OsAffx.11748.1.S1_at11/111+38609421..38613643Protein kinase domain containing protein, expressed
LOC_Os01g65950NANA1+38614801..38615042hypothetical protein
LOC_Os01g65960NANA1+38617371..38617718thioesterase family protein, expressed
LOC_Os01g65970OsAffx.11749.1.S1_at11/111+38618659..38619470Transcription factor HBP-1b, putative
LOC_Os01g65970OsAffx.11749.1.S1_x_at10/111+38618659..38619470Transcription factor HBP-1b, putative
LOC_Os01g65970OsAffx.6141.1.S1_x_at7/111+38618659..38619470Transcription factor HBP-1b, putative
LOC_Os01g65980NANA1+38624337..38624765retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g65986Os.49295.1.S1_at11/111+38626848..38632491Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12329.1.S1_at--973--691Chr01:38602468..38602492 (25 bp)
ATGAGAGCGTGGTCGCTCTTGCCAA
LOC_Os01g65920
Os.12329.1.S1_at--1147--1771Chr01:38602394..38602418 (25 bp)
ACCGACCGGGCAATGTACTCGCTGG
LOC_Os01g65920
Os.12329.1.S1_at--946--5751Chr01:38602292..38602316 (25 bp)
GACGGGCTGGCCAGCCTGAACATCA
LOC_Os01g65920
Os.12329.1.S1_at--439--8251Chr01:38602189..38602213 (25 bp)
GGCACTCCCTCATCATCAGCGGATG
LOC_Os01g65920
Os.12329.1.S1_at--907--411Chr01:38602178..38602202 (25 bp)
ATCATCAGCGGATGCCTCAGCCTCA
LOC_Os01g65920
Os.12329.1.S1_at--315--791Chr01:38602114..38602138 (25 bp)
ATGGGAGGGCCATCCTCTCCAACCA
LOC_Os01g65920
Os.12329.1.S1_at--800--9891Chr01:38602085..38602109 (25 bp)
TACTAGCAAGCTCCCTCTTGTAGAA
LOC_Os01g65920
Os.12329.1.S1_at--924--2671Chr01:38602078..38602102 (25 bp)
AAGCTCCCTCTTGTAGAAACTAGAA
LOC_Os01g65920
Os.12329.1.S1_at--315--5531Chr01:38602063..38602087 (25 bp)
GAAACTAGAACAGCTCGGATTTGAG
LOC_Os01g65920
Os.12329.1.S1_at--593--9811Chr01:38602026..38602050 (25 bp)
TAAAACCCCAGGATTGCTTACGATG
LOC_Os01g65920
Os.12329.1.S1_at--143--5531Chr01:38601994..38602018 (25 bp)
GAAAACTGCTTCTGTGTTTGTGGAT
LOC_Os01g65920
Target Sequence 
ATGAGAGCGTGGTCGCTCTTGCCAATGGCTGCCCTCACCTGCGGTCGCTGGGGCTCTACTACTGCCANGAACATCACCGA
CCGGGCAATGTACTCGCTGGCGGCGAACAGCCGGCGGGTGAGGAGCAAAGGCCGGAGCTGGGACGCGGCGGCGAGGAAGA
ACGCCGGCGCCGGCGCCGACGGGCTGGCCAGCCTGAACATCAGCCAGTGCACGGCGCTGACGCCGCCGGCGGTCCAGGCG
GTGTGCGACTCCTTCCCGGCGCTCCACACGTGCCCGGAGCGGCACTCCCTCATCATCAGCGGATGCCTCAGCCTCACCTC
CGTCCACTGCGCCTGCGCTCACCACCCGCACCGCCATGGGAGGGCCATCCTCTCCAACCATGCCTACTAGCAAGCTCCCT
CTTGTAGAAACTAGAACAGCTCGGATTTGAGGAAGATGTAAATTAAAACCCCAGGATTGCTTACGATGGACTGGGGAAAA
CTGCTTCTGTGTTTGTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12329.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis