Browse Element(s) Details


Os.57029.1.S1_at

Description gb:AK110768.1
DB_XREF= gi:32995977
TID=Os.57029.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57029 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-A08, full insert sequence.
FL= gb:AK110768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g136501/11expressed protein
LOC_Os01g659101/11Apocytochrome F, C-terminal family protein
LOC_Os11g328701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13610NANA8+8086470..8089395retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13620NANA8+8089711..8095821retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os08g13630Os.50253.2.S1_x_at11/118+8098600..8101200expressed protein
LOC_Os08g13630Os.50253.1.S1_at11/118+8098600..8101200expressed protein
LOC_Os08g13640OsAffx.5804.1.S1_at9/118+8101657..8109801TPR Domain containing protein
LOC_Os08g13650OsAffx.29179.1.S1_at10/118+8113327..8116887expressed protein
LOC_Os08g13650OsAffx.21416.1.S1_at3/118+8113327..8116887expressed protein
LOC_Os08g13650OsAffx.25582.1.S1_at2/118+8113327..8116887expressed protein
LOC_Os08g13650Os.57029.1.S1_at1/118+8113327..8116887expressed protein
LOC_Os08g13650Os.51832.1.S1_at1/118+8113327..8116887expressed protein
LOC_Os08g13660OsAffx.29180.1.S1_at11/118+8118681..8122030transposon protein, putative, unclassified
LOC_Os08g13660OsAffx.8356.1.S1_at4/118+8118681..8122030transposon protein, putative, unclassified
LOC_Os08g13660OsAffx.8356.1.S1_x_at3/118+8118681..8122030transposon protein, putative, unclassified
LOC_Os08g13670OsAffx.5805.1.S1_at11/118+8129503..8130503hypothetical protein
LOC_Os08g13680Os.33800.1.S1_at11/118+8141009..8142344expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009775biological_processphotosynthetic electron transport in cytochrome b6/f
GO:0009512cellular_componentcytochrome b6f complex
GO:0045158molecular_functionelectron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57029.1.S1_at--82--6211Chr06:2073127..2073151 (25 bp)
GAGGCATCTGCATCAAGCATTCTCT
NONE
Os.57029.1.S1_at--676--111Chr06:2073109..2073133 (25 bp)
ATTCTCTTGCTGGTTCCCGAGTCAA
NONE
Os.57029.1.S1_at--1067--691Chr06:2073067..2073091 (25 bp)
ATGAGGACTGAGCTAGCAAGCAGCA
NONE
Os.57029.1.S1_at--596--5051Chr06:2073045..2073069 (25 bp)
GCAGCAACAGACAGTGCATGTGTGT
NONE
Os.57029.1.S1_at--366--7434Chr07:24813196..24813220 (25 bp)
GTGTACTAACATCAAGCGGCAAGCC
NONE
Os.57029.1.S1_at--397--1492Chr05:1507964..1507988 (25 bp)
AGCAAAGGGCTGACCGACCGAGCAA
NONE
Os.57029.1.S1_at--184--1371Chr06:2072952..2072976 (25 bp)
AGAGCAGCATATTCGCACGGACGGT
NONE
Os.57029.1.S1_at--1149--4231Chr06:2072844..2072868 (25 bp)
CCGTCCCTGCAACCGTGCGAATAAG
NONE
Os.57029.1.S1_at--1032--172Chr07:5796379..5796463 (25 bp)
ATTTAGTCATCAATTCGGTCATAGA
NONE
Os.57029.1.S1_at--942--7071Chr06:2072720..2072744 (25 bp)
GTCAATTTAGTTAGTCTCCTCGGAT
NONE
Os.57029.1.S1_at--371--60933Chr12:25197974..25197998 (25 bp)
GAGTCTTTACTCATAAGTGCTTACG
NONE
Target Sequence 
GAGGCATCTGCATCAAGCATTCTCTTGCTGGTTCCCGAGTCAATCGGCAAGGGGCGACAGATGAGGACTGAGCTAGCAAG
CAGCAGCAACAGACAGTGCATGTGTGTACTAACATCAAGCGGCAAGCCAACAAGCAAAGGGCTGACCGACCGAGCAAAGA
TGCAGATAGGCAAGCAGAGCAGCATATTCGCACGGACGGTGGCGCGGCCACGGAGGAGGGGACGCGAGGGACGGGAGCCT
CGCCGGCCCTTGAGCACCCCCCCCATCGCCGACGCTCTAGCTCCCGTCCCTGCAACCGTGCGAATAAGGGTGGGCAGAAA
AAAAAAACCGAACCGAAAAGATCGAGACGAGACCGAGAAATTTAGTCATCAATTCGGTCATAGATAGTGAAAGACCGATT
TTGTTCGGTCAATTTAGTTAGTCTCCTCGGATAACCGAATAGACCAAAAAGACTGAATTATCAAAAAATGTCTAAATACA
ACCTAATAAGAGTCTTTACTCATAAGTGCTTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis