Browse Element(s) Details


OsAffx.29179.1.S1_at

Description tigr:9636.m01349
TID=OsAffx.29179.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1365010/11expressed protein
LOC_Os09g324501/11DNA topoisomerase III beta-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13610NANA8+8086470..8089395retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13620NANA8+8089711..8095821retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os08g13630Os.50253.2.S1_x_at11/118+8098600..8101200expressed protein
LOC_Os08g13630Os.50253.1.S1_at11/118+8098600..8101200expressed protein
LOC_Os08g13640OsAffx.5804.1.S1_at9/118+8101657..8109801TPR Domain containing protein
LOC_Os08g13650OsAffx.29179.1.S1_at10/118+8113327..8116887expressed protein
LOC_Os08g13650OsAffx.21416.1.S1_at3/118+8113327..8116887expressed protein
LOC_Os08g13650OsAffx.25582.1.S1_at2/118+8113327..8116887expressed protein
LOC_Os08g13650Os.57029.1.S1_at1/118+8113327..8116887expressed protein
LOC_Os08g13650Os.51832.1.S1_at1/118+8113327..8116887expressed protein
LOC_Os08g13660OsAffx.29180.1.S1_at11/118+8118681..8122030transposon protein, putative, unclassified
LOC_Os08g13660OsAffx.8356.1.S1_at4/118+8118681..8122030transposon protein, putative, unclassified
LOC_Os08g13660OsAffx.8356.1.S1_x_at3/118+8118681..8122030transposon protein, putative, unclassified
LOC_Os08g13670OsAffx.5805.1.S1_at11/118+8129503..8130503hypothetical protein
LOC_Os08g13680Os.33800.1.S1_at11/118+8141009..8142344expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006265biological_processDNA topological change
GO:0006268biological_processDNA unwinding during replication
GO:0003677molecular_functionDNA binding
GO:0003916molecular_functionDNA topoisomerase activity
GO:0003917molecular_functionDNA topoisomerase type I activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29179.1.S1_at--398--3511Chr08:8115529..8115553 (25 bp)
CATGATTCAGTCTGATGGGCAGCAA
LOC_Os08g13650
OsAffx.29179.1.S1_at--669--5052Chr08:8115547..8115571 (25 bp)
GCAGCAAGAAGATTCTTCTCTTCAA
LOC_Os08g13650
OsAffx.29179.1.S1_at--89--10591Chr08:8115562..8115586 (25 bp)
TTCTCTTCAATCTCCCTGTCCTGTT
LOC_Os08g13650
OsAffx.29179.1.S1_at--682--4271Chr08:8115576..8115600 (25 bp)
CCTGTCCTGTTTCTACATCTAACAA
LOC_Os08g13650
OsAffx.29179.1.S1_at--832--5031Chr08:8115730..8115754 (25 bp)
GCAGACATTTAGTAGCTTCGTTGAG
LOC_Os08g13650
OsAffx.29179.1.S1_at--860--10051Chr08:8115739..8115763 (25 bp)
TAGTAGCTTCGTTGAGGCTCAAAAG
LOC_Os08g13650
OsAffx.29179.1.S1_at--454--6211Chr08:8115752..8115776 (25 bp)
GAGGCTCAAAAGTTTTGGAACCATT
LOC_Os08g13650
OsAffx.29179.1.S1_at--295--10031NONE
TAGAAAACGATCCAAACAATGCCAC
NONE
OsAffx.29179.1.S1_at--268--8231Chr08:8116607..8116631 (25 bp)
GGCAACAACCAAATAGACCTTTAGA
LOC_Os08g13650
OsAffx.29179.1.S1_at--193--3391Chr08:8116731..8116755 (25 bp)
CAGCTTCTCAGAATCCAAACCAAAA
LOC_Os08g13650
OsAffx.29179.1.S1_at--280--8412Chr09:19378860..19378879 (20 bp)
GGCCCAAGAACACAGCCTTAATGGC
LOC_Os09g32450
Target Sequence 
CATGATTCAGTCTGATGGGCAGCAAGAAGATTCTTCTCTTCAATCTCCCTGTCCTGTTTCTACATCTAACAAAGAAAACA
CCTTACCTAATTGGGTACCACAAAGTAGCAGACATTTAGTAGCTTCGTTGAGGCTCAAAAGTTTTGGAACCATTATGGGG
GTCAAATTGGTTTTGATGTTAGAAAACGATCCAAACAATGCCACACTTCTGGCCAACAAATTGTTGGCCACACTTTGTTT
GCCATGCCACACCTATGGCAAATTGAGTTGTGGCAATGTTAGGCAACAACCAAATAGACCTTTAGATTCTGAGAAGCAGC
TGATTGGTAACCAGCTTCTGAGAATCTGGAAAAGCTGGGTTTCCCAGCTTTTGGCTTCTAGTTCATTTTCTGGATTCTAC
AACTACAGCTTCTCAGAATCCAAACCAAAAGCTGAACTGTTTGGGGAGCTTCTAATTCTGGGAGAAGCTGGAGCAGCTAG
AAGCTCCCCCAAACAGGCCCAAGAACACAGCCTTAATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29179.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis