Browse Element(s) Details


OsAffx.25582.1.S1_at

Description tigr:9631.m04522
TID=OsAffx.25582.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g136502/11expressed protein
LOC_Os01g229542/11Serine carboxypeptidase II precursor, putative, expressed
LOC_Os11g328701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13610NANA8+8086470..8089395retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13620NANA8+8089711..8095821retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os08g13630Os.50253.2.S1_x_at11/118+8098600..8101200expressed protein
LOC_Os08g13630Os.50253.1.S1_at11/118+8098600..8101200expressed protein
LOC_Os08g13640OsAffx.5804.1.S1_at9/118+8101657..8109801TPR Domain containing protein
LOC_Os08g13650OsAffx.29179.1.S1_at10/118+8113327..8116887expressed protein
LOC_Os08g13650OsAffx.21416.1.S1_at3/118+8113327..8116887expressed protein
LOC_Os08g13650OsAffx.25582.1.S1_at2/118+8113327..8116887expressed protein
LOC_Os08g13650Os.57029.1.S1_at1/118+8113327..8116887expressed protein
LOC_Os08g13650Os.51832.1.S1_at1/118+8113327..8116887expressed protein
LOC_Os08g13660OsAffx.29180.1.S1_at11/118+8118681..8122030transposon protein, putative, unclassified
LOC_Os08g13660OsAffx.8356.1.S1_at4/118+8118681..8122030transposon protein, putative, unclassified
LOC_Os08g13660OsAffx.8356.1.S1_x_at3/118+8118681..8122030transposon protein, putative, unclassified
LOC_Os08g13670OsAffx.5805.1.S1_at11/118+8129503..8130503hypothetical protein
LOC_Os08g13680Os.33800.1.S1_at11/118+8141009..8142344expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0004187molecular_functioncarboxypeptidase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25582.1.S1_at--655--4791Chr03:26318153..26318413 (25 bp)
GCTCCTGCTGTTGGGCACGACCGAG
NONE
OsAffx.25582.1.S1_at--1075--5091Chr03:26318724..26318744 (21 bp)
GCACGACCGAGACTGAGGCCGAATT
NONE
OsAffx.25582.1.S1_at--655--4071Chr03:26318724..26318747 (24 bp)
CGACCGAGACTGAGGCCGAATTTGT
NONE
OsAffx.25582.1.S1_at--3--5731Chr03:26318730..26318754 (25 bp)
GACTGAGGCCGAATTTGTCGGTCCT
NONE
OsAffx.25582.1.S1_at--775--1510Chr09:18861867..18861888 (22 bp)
ATTTGTCGGTCCTGACATTTTTGCG
NONE
OsAffx.25582.1.S1_at--645--9435Chr09:15871915..15872267 (25 bp)
TCGGTCCTGACATTTTTGCGCTGAA
NONE
OsAffx.25582.1.S1_at--846--7795Chr08:17764941..17765008 (25 bp)
GGTCCTGACATTTTTGCGCTGAAAT
NONE
OsAffx.25582.1.S1_at--386--5671Chr03:26318755..26318779 (25 bp)
GACATTTTTGCGCTGAAATTCAGTC
NONE
OsAffx.25582.1.S1_at--236--4574Chr05:20546195..20546214 (20 bp)
GCGCTGAAATTCAGTCTTCACTTTT
NONE
OsAffx.25582.1.S1_at--926--5596Chr06:10461080..10461580 (25 bp)
GAAATTCAGTCTTCACTTTTCAAAG
NONE
OsAffx.25582.1.S1_at--725--71353Chr12:1589067..1589089 (23 bp)
GTCTTCACTTTTCAAAGACCGAAAG
NONE
Target Sequence 
GCTCCTGCTGTTGGGCACGACCGAGACTGAGGCCGAATTTGTCGGTCCTGACATTTTTGCGCTGAAATTCAGTCTTCACT
TTTCAAAGACCGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis