Browse Element(s) Details


Os.50253.1.S1_at

Description gb:AK120342.1
DB_XREF= gi:37989965
TID=Os.50253.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50253 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013106J20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013061K19, full insert sequence.
FL= gb:AK120342.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1363011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13600Os.40360.1.S1_at9/118+8074000..8077688hypothetical protein
LOC_Os08g13600Os.40360.1.S1_x_at7/118+8074000..8077688hypothetical protein
LOC_Os08g13600Os.40855.5.S1_x_at1/118+8074000..8077688hypothetical protein
LOC_Os08g13610NANA8+8086470..8089395retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13620NANA8+8089711..8095821retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os08g13630Os.50253.2.S1_x_at11/118+8098600..8101200expressed protein
LOC_Os08g13630Os.50253.1.S1_at11/118+8098600..8101200expressed protein
LOC_Os08g13640OsAffx.5804.1.S1_at9/118+8101657..8109801TPR Domain containing protein
LOC_Os08g13650OsAffx.29179.1.S1_at10/118+8113327..8116887expressed protein
LOC_Os08g13650OsAffx.21416.1.S1_at3/118+8113327..8116887expressed protein
LOC_Os08g13650OsAffx.25582.1.S1_at2/118+8113327..8116887expressed protein
LOC_Os08g13650Os.57029.1.S1_at1/118+8113327..8116887expressed protein
LOC_Os08g13650Os.51832.1.S1_at1/118+8113327..8116887expressed protein
LOC_Os08g13660OsAffx.29180.1.S1_at11/118+8118681..8122030transposon protein, putative, unclassified
LOC_Os08g13660OsAffx.8356.1.S1_at4/118+8118681..8122030transposon protein, putative, unclassified
LOC_Os08g13660OsAffx.8356.1.S1_x_at3/118+8118681..8122030transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50253.1.S1_at--297--2311Chr08:8100521..8100545 (25 bp)
AAAGGCCATGACTTACTGTCATTTT
LOC_Os08g13630
Os.50253.1.S1_at--1054--1011Chr08:8100551..8100575 (25 bp)
AGGTTTCGTTCATCTTATCAGCAAA
LOC_Os08g13630
Os.50253.1.S1_at--598--5131Chr08:8100571..8100595 (25 bp)
GCAAATCTGACTCTGAATGTTCAAG
LOC_Os08g13630
Os.50253.1.S1_at--332--2251Chr08:8100603..8100627 (25 bp)
AAATTCTTGTACTTTCAGCAGCCCA
LOC_Os08g13630
Os.50253.1.S1_at--925--7331Chr08:8100633..8100657 (25 bp)
GTGCACCAGCCAGAATGTAACAATG
LOC_Os08g13630
Os.50253.1.S1_at--346--8211Chr08:8100727..8100751 (25 bp)
GGAAGGCTATGTCCAGCATATCCCT
LOC_Os08g13630
Os.50253.1.S1_at--1054--9911Chr08:8101030..8101054 (25 bp)
TACTGGAGTTATACCGCCGGAACTC
LOC_Os08g13630
Os.50253.1.S1_at--580--10151Chr08:8101039..8101063 (25 bp)
TATACCGCCGGAACTCGGGAACATG
LOC_Os08g13630
Os.50253.1.S1_at--750--731Chr08:8101079..8101103 (25 bp)
ATGTTATTTCCATTTGCGGGCAAAA
LOC_Os08g13630
Os.50253.1.S1_at--95--4671Chr08:8101094..8101118 (25 bp)
GCGGGCAAAACGAGCTGCAATGTGT
LOC_Os08g13630
Os.50253.1.S1_at--618--9471Chr08:8101153..8101177 (25 bp)
TCTGTACCGTACACCATATACTTAT
LOC_Os08g13630
Target Sequence 
AAAGGCCATGACTTACTGTCATTTTTTTTAAGGTTTCGTTCATCTTATCAGCAAATCTGACTCTGAATGTTCAAGTTTTG
TCAAATTCTTGTACTTTCAGCAGCCCAAACCTGTGCACCAGCCAGAATGTAACAATGTCGCATCTGTTGATACTGGGATG
TCAAACCCAGCTGCAAGGGCTGATTCCAGCCATTGTATTCCTGGTAGGAAGGCTATGTCCAGCATATCCCTTTCCTTCTC
TGGTTTGACTGGTGAAAGTAGTGCTGGAGATTTTAAGATTGTGGGGTATTGTCAATGATCCTTATGGGTGAGCCACCCTG
GCATCCTCCTGGTCCTGAAAGTTCATCTGCTGGAGGCAGCAGAGATAATGCTCTTACACGGTACAAGGAGAAGAAGAAGA
GAAGAAAATATTTACATGAGAACAAACTTACTGGAGTTATACCGCCGGAACTCGGGAACATGAGTAAATTCAAAATTATG
TTATTTCCATTTGCGGGCAAAACGAGCTGCAATGTGTTCTGTATTTCTACTAATTTATTGTACAACATTTTTCTGTACCG
TACACCATATACTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis