Browse Element(s) Details


OsAffx.29180.1.S1_at

Description tigr:9636.m01350
TID=OsAffx.29180.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1366011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13620NANA8+8089711..8095821retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os08g13630Os.50253.2.S1_x_at11/118+8098600..8101200expressed protein
LOC_Os08g13630Os.50253.1.S1_at11/118+8098600..8101200expressed protein
LOC_Os08g13640OsAffx.5804.1.S1_at9/118+8101657..8109801TPR Domain containing protein
LOC_Os08g13650OsAffx.29179.1.S1_at10/118+8113327..8116887expressed protein
LOC_Os08g13650OsAffx.21416.1.S1_at3/118+8113327..8116887expressed protein
LOC_Os08g13650OsAffx.25582.1.S1_at2/118+8113327..8116887expressed protein
LOC_Os08g13650Os.57029.1.S1_at1/118+8113327..8116887expressed protein
LOC_Os08g13650Os.51832.1.S1_at1/118+8113327..8116887expressed protein
LOC_Os08g13660OsAffx.29180.1.S1_at11/118+8118681..8122030transposon protein, putative, unclassified
LOC_Os08g13660OsAffx.8356.1.S1_at4/118+8118681..8122030transposon protein, putative, unclassified
LOC_Os08g13660OsAffx.8356.1.S1_x_at3/118+8118681..8122030transposon protein, putative, unclassified
LOC_Os08g13670OsAffx.5805.1.S1_at11/118+8129503..8130503hypothetical protein
LOC_Os08g13680Os.33800.1.S1_at11/118+8141009..8142344expressed protein
LOC_Os08g13690Os.4880.1.S1_at10/118+8147026..814954160S ribosomal protein L7-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29180.1.S1_at--652--5591Chr08:8118832..8119141 (25 bp)
GAAATACAGTCAAAGTCCATGCATT
LOC_Os08g13660
OsAffx.29180.1.S1_at--160--7271Chr08:8119133..8119155 (23 bp)
GTCCATGCATTAAAAGCTCTTGTTT
LOC_Os08g13660
OsAffx.29180.1.S1_at--830--4851Chr08:8119172..8119196 (25 bp)
GCTACCTGAGCAGTATGTCCTGGGT
LOC_Os08g13660
OsAffx.29180.1.S1_at--526--2131Chr08:8119205..8119229 (25 bp)
ACAGGTGGCACATCCTAGAGCTGCA
LOC_Os08g13660
OsAffx.29180.1.S1_at--1059--2411Chr08:8119531..8119555 (25 bp)
AAAACTGGCTCGACAAATATCACAA
LOC_Os08g13660
OsAffx.29180.1.S1_at--422--3391Chr08:8121857..8121881 (25 bp)
CAGCGGGAGGTAGCGTCACATCATT
LOC_Os08g13660
OsAffx.29180.1.S1_at--405--4652Chr08:8121869..8121893 (25 bp)
GCGTCACATCATTCAGAGTTTTCTA
LOC_Os08g13660
OsAffx.29180.1.S1_at--311--6811Chr08:8121886..8121910 (25 bp)
GTTTTCTATCACCAACAATTGCAAG
LOC_Os08g13660
OsAffx.29180.1.S1_at--969--8271Chr08:8121916..8121940 (25 bp)
GGCATGTTGCGCAAGCAGACCGGTT
LOC_Os08g13660
OsAffx.29180.1.S1_at--284--5051Chr08:8121930..8121954 (25 bp)
GCAGACCGGTTGATGCACGAGCAGT
LOC_Os08g13660
OsAffx.29180.1.S1_at--991--793Chr12:24360768..24360912 (25 bp)
ATGGGCCTTGCACGACATGCTTGGA
NONE
Target Sequence 
GAAATACAGTCAAAGTCCATGCATTAAAAGCTCTTGTTTTGATGAATATTAAGCAGCTACCTGAGCAGTATGTCCTGGGT
AGATGGACACAGGTGGCACATCCTAGAGCTGCAAAGGATGCAAATGGGAAAAATCAAGTTGAAGAGAAAATTGATCAGTT
GTCTATTACTAATGGCAATCAGTTTGAAGCACAAGATACAACTCAAGCATCTAGTAGCTTTGCACATGTTGTTGGCCTCA
AGAAAAGACAGACACGACAAGTGGGTCAAAGAGAAAGAAAAACTGGCTCGACAAATATCACAAAAATAACCAGCAAAGAT
CAGAAAAGAACAATCCTTGCAAACAAACTAATGAGACATGAGATATATGAACCATTGGCATGCATAAACAACATGTGGGT
CCAGCGGGAGGTAGCGTCACATCATTCAGAGTTTTCTATCACCAACAATTGCAAGTTGAAGGCATGTTGCGCAAGCAGAC
CGGTTGATGCACGAGCAGTGGTATTGATGATGAACATGGGCCTTGCACGACATGCTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis