Browse Element(s) Details


Os.4880.1.S1_at

Description gb:AK102873.1
DB_XREF= gi:32988082
TID=Os.4880.1
CNT=98
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4880 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033112B19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033112B19, full insert sequence.
FL= gb:AK102873.1 gb:AK061680.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1369010/1160S ribosomal protein L7-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13660OsAffx.29180.1.S1_at11/118+8118681..8122030transposon protein, putative, unclassified
LOC_Os08g13660OsAffx.8356.1.S1_at4/118+8118681..8122030transposon protein, putative, unclassified
LOC_Os08g13660OsAffx.8356.1.S1_x_at3/118+8118681..8122030transposon protein, putative, unclassified
LOC_Os08g13670OsAffx.5805.1.S1_at11/118+8129503..8130503hypothetical protein
LOC_Os08g13680Os.33800.1.S1_at11/118+8141009..8142344expressed protein
LOC_Os08g13690Os.4880.1.S1_at10/118+8147026..814954160S ribosomal protein L7-1, putative, expressed
LOC_Os08g13700OsAffx.29181.1.S1_at1/118+8155044..8156000hypothetical protein
LOC_Os08g13710Os.7735.2.S1_x_at3/118+8161203..8162107hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4880.1.S1_at--309--9431Chr08:8149024..8149048 (25 bp)
TCGGTCCACACTTCAAGGAGGCCAA
LOC_Os08g13690
Os.4880.1.S1_at--88--9191Chr08:8149130..8149154 (25 bp)
TGCCGGCAACCGTGAGGACTACATC
LOC_Os08g13690
Os.4880.1.S1_at--174--5291Chr08:8149204..8149228 (25 bp)
GAATGTCTCCTTATCTATGTATGCA
LOC_Os08g13690
Os.4880.1.S1_at--449--4731Chr08:8149251..8149275 (25 bp)
GCTGTCTTGAGCTGGATACTGGATA
LOC_Os08g13690
Os.4880.1.S1_at--781--8011Chr08:8149297..8149321 (25 bp)
GGAGGTAGACTTGGCCTGTGTTTAC
LOC_Os08g13690
Os.4880.1.S1_at--424--8611Chr08:8149336..8149360 (25 bp)
TGGGAAATCTGTACCCGTTGGCCCT
LOC_Os08g13690
Os.4880.1.S1_at--825--9271Chr08:8149370..8149394 (25 bp)
TCCTGTCTGGATGCTTTTGTTTCTT
LOC_Os08g13690
Os.4880.1.S1_at--620--731Chr08:8149398..8149422 (25 bp)
ATGTTCGCTAGTTGTGCTTGCTTTA
LOC_Os08g13690
Os.4880.1.S1_at--588--4891Chr08:8149417..8149441 (25 bp)
GCTTTATTGCCTTATTTGTTCTGTT
LOC_Os08g13690
Os.4880.1.S1_at--254--6911Chr08:8149497..8149521 (25 bp)
GTATCCTCTACCATTGCTACAATAT
LOC_Os08g13690
Os.4880.1.S1_at--271--251Chr08:8149518..8149542 (25 bp)
ATATCAGCGGCCGATAGCTTGTGCC
NONE
Target Sequence 
TCGGTCCACACTTCAAGGAGGCCAACAACTTCCTGTGGCCCTTCAAGTTGAAGGCACCACTCGGTGGCCTCAAGAAGAAG
AGGAACCACTATGTCGAGGGTGGTGATGCCGGCAACCGTGAGGACTACATCAACGAGCTCATCCGGAGGATGAACTAGGC
TTTTCTTCTGTTACTGGGGAGAATGTCTCCTTATCTATGTATGCAACATGGTTATTTTTATCTTTAGGCTGTCTTGAGCT
GGATACTGGATATGCAATTTTGGCGTTCCAACAGGAGGTAGACTTGGCCTGTGTTTACAGTGAGACTTCCGGTGGGAAAT
CTGTACCCGTTGGCCCTGGGGTTTGTTCCTGTCTGGATGCTTTTGTTTCTTGATATGTTCGCTAGTTGTGCTTGCTTTAT
TGCCTTATTTGTTCTGTTGATCAACTCTCTGCATTGATCAACAATCTTCATTTAGGCTGAGTTCGTGGGGTTCGTATCCT
CTACCATTGCTACAATATCAGCGGCCGATAGCTTGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4880.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis