Browse Element(s) Details


Os.7735.2.S1_x_at

Description gb:AK071002.1
DB_XREF= gi:32981025
TID=Os.7735.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7735 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023079B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078P05, full insert sequence.
FL= gb:AK071002.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g137103/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13680Os.33800.1.S1_at11/118+8141009..8142344expressed protein
LOC_Os08g13690Os.4880.1.S1_at10/118+8147026..814954160S ribosomal protein L7-1, putative, expressed
LOC_Os08g13700OsAffx.29181.1.S1_at1/118+8155044..8156000hypothetical protein
LOC_Os08g13710Os.7735.2.S1_x_at3/118+8161203..8162107hypothetical protein
LOC_Os08g13720NANA8+8178121..8180325transposon protein, putative, unclassified
LOC_Os08g13730OsAffx.29182.1.S1_at11/118+8182771..8183744hypothetical protein
LOC_Os08g13740OsAffx.16982.1.S1_at11/118+8185083..8185910hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7735.2.S1_x_at--729--2991Chr12:20108864..20108888 (25 bp)
AATGAGCCGCCAGATCCGTTAAGAG
NONE
Os.7735.2.S1_x_at--346--6271Chr12:20108677..20108701 (25 bp)
GATGTATCCGGCTACCCAAAGACGA
NONE
Os.7735.2.S1_x_at--41--2771NONE
AAGACGACGGAGCTAGCACATGCAG
NONE
Os.7735.2.S1_x_at--41--10531Chr12:20107566..20107735 (25 bp)
TTCACTGCTCTGGAGGTCAGGTTTC
NONE
Os.7735.2.S1_x_at--89--6851Chr12:20107546..20107570 (25 bp)
GTTTCGCCGATGATGCGCCATGGAT
NONE
Os.7735.2.S1_x_at--1024--431Chr12:20107500..20107524 (25 bp)
ATCTTCAAGGTCATTTCTATCTCCC
NONE
Os.7735.2.S1_x_at--445--9311Chr12:20107479..20107503 (25 bp)
TCCCAGCCAAGGTCACTGTTCAAAT
NONE
Os.7735.2.S1_x_at--235--6752Chr12:20107462..20107486 (25 bp)
GTTCAAATGTGCTCCTCCATTACTC
NONE
Os.7735.2.S1_x_at--1081--912Chr12:20107203..20107227 (25 bp)
AGGCATGCTTTAGCCATGGTATGTC
NONE
Os.7735.2.S1_x_at--1140--7852Chr12:20107186..20107210 (25 bp)
GGTATGTCATATTTGCCAACTCTCT
NONE
Os.7735.2.S1_x_at--1067--4391Chr12:20107172..20107196 (25 bp)
GCCAACTCTCTCACACAAGATGTAA
NONE
Target Sequence 
AATGAGCCGCCAGATCCGTTAAGAGGAGGCTGGGGAGGAGAAGGGGAGTCGGGAGGGACACCACCGCCTGGAGCGAGGCA
CACCCCGGCCGCGGCCGCGACCCCGCATCCGTCGCCCGCTGCGAGCCGCATCTCTGCCCCGGTCTGTGCGGCGCCAAATC
CGCCTCGGGACCATCGGCTGGCTCGCCGATGTATCCGGCTACCCAAAGACGACGGAGCTAGCACATGCAGAAGATTACGG
AGTGGCAGGATGAGGTGGTGGTGGTTCTTCCCCAGACCCTTCACTGCTCTGGAGGTCAGGTTTCGCCGATGATGCGCCAT
GGATTTGGGCCTCCCGGACCTCAAAATCTTCAAGGTCATTTCTATCTCCCAGCCAAGGTCACTGTTCAAATGTGCTCCTC
CATTACTCCTTCCCCAGAGCCACAATACCATCCCCCTCAATCGGATGATGGGTAGACATGTATCATGTGTTTTTGTATGG
TCTGGAGAAGGCATGCTTTAGCCATGGTATGTCATATTTGCCAACTCTCTCACACAAGATGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7735.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis