Browse Element(s) Details


OsAffx.29181.1.S1_at

Description tigr:9636.m01372
TID=OsAffx.29181.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lectin (probable mannose binding), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1387011/11D-mannose binding lectin family protein
LOC_Os08g137001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13840OsAffx.5807.1.S1_at11/118+8252232..8253252WRKY DNA binding domain containing protein, expressed
LOC_Os08g13850OsAffx.20425.1.S1_x_at2/118+8263165..8263506hypothetical protein
LOC_Os08g13860Os.48441.1.S1_at1/118+8269576..8273965retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g13860OsAffx.943.1.S1_at1/118+8269576..8273965retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g13870OsAffx.29181.1.S1_at11/118+8276619..8278991D-mannose binding lectin family protein
LOC_Os08g13880NANA8+8283927..8284870hypothetical protein
LOC_Os08g13890Os.27605.1.S1_at11/118+8290891..8293230Exonuclease, putative, expressed
LOC_Os08g13900OsAffx.16986.1.S1_at9/118+8294616..8295803expressed protein
LOC_Os08g13900Os.27718.1.A1_at1/118+8294616..8295803expressed protein
LOC_Os08g13910Os.56197.1.S1_at7/118+8301435..8305195hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29181.1.S1_at--28--4631Chr08:8277193..8277217 (25 bp)
GCGATGCAACACTACCTAACTGGAG
LOC_Os08g13870
OsAffx.29181.1.S1_at--573--3271Chr08:8277168..8277192 (25 bp)
CAACAGAATTGCGATTGCGCTGGAT
LOC_Os08g13870
OsAffx.29181.1.S1_at--808--7671Chr08:8277134..8277158 (25 bp)
GGGTTACAATACCTGCATGAGGAGA
LOC_Os08g13870
OsAffx.29181.1.S1_at--470--6151Chr08:8277107..8277131 (25 bp)
GAGGTGCCTATAATTCACTGCGACA
LOC_Os08g13870
OsAffx.29181.1.S1_at--382--5491Chr08:8277072..8277096 (25 bp)
GAACATACTGATTGACAGCTCAGGA
LOC_Os08g13870
OsAffx.29181.1.S1_at--162--8551Chr08:8276945..8276969 (25 bp)
TGGAGCAAGAACACAGCGATCACTG
LOC_Os08g13870
OsAffx.29181.1.S1_at--287--5011Chr08:8276860..8276884 (25 bp)
GCATGGCACTTAAGTTGGCCGGCGA
LOC_Os08g13870
OsAffx.29181.1.S1_at--157--6131Chr08:8276819..8276843 (25 bp)
GAGTGGGCCTACGAGTACATGTTCT
LOC_Os08g13870
OsAffx.29181.1.S1_at--645--691Chr08:8276704..8276728 (25 bp)
ATGAGCCAGTGACACGGCCTGTGAT
LOC_Os08g13870
OsAffx.29181.1.S1_at--207--3931Chr08:8276690..8276714 (25 bp)
CGGCCTGTGATGAAGAGTGTCGTTC
LOC_Os08g13870
OsAffx.29181.1.S1_at--176--1112Chr08:8155386..8155406 (21 bp)
AGTGTGAAAGTTCAGCGTCCTCCAC
LOC_Os08g13700
Target Sequence 
GCGATGCAACACTACCTAACTGGAGCAACAGAATTGCGATTGCGCTGGATGTGGCTAGGGGGTTACAATACCTGCATGAG
GAGATAGAGGTGCCTATAATTCACTGCGACATCAAGCCAGAGAACATACTGATTGACAGCTCAGGAATGGCAAAGATCGC
AGATTTTGGCCTGGCAAAGCTGCTGATAGGGAACCAAACCAAGACCTTCACCGGTGTCCGGGGCACGCGTGGCTATCTCG
CACCAGAGTGGAGCAAGAACACAGCGATCACTGTGAAGGTAGACATCTACAGCTTTGGCGTGATGCTTCTGGAGATCATA
AGCTGCAGGAAGAGCATGGCACTTAAGTTGGCCGGCGAGGAGTGCAACATCTCTGAGTGGGCCTACGAGTACATGTTCTC
AGGTGAAATGAAAGAAGTGGCAGCCGGCAAAGGTGTCGACGAGGTTGAGCTGGAGCGGATGGTGAAGATCGGCATTTGGT
GCACTCAAAATGAGCCAGTGACACGGCCTGTGATGAAGAGTGTCGTTCAGATGATGGAAGGAAGTGTGAAAGTTCAGCGT
CCTCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29181.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis