Browse Element(s) Details


Os.27718.1.A1_at

Description gb:CB685627
DB_XREF= gi:29689352
DB_XREF=OSJNEf16D07.r
CLONE=OSJNEf16D07
TID=Os.27718.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27718 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g139001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13860Os.48441.1.S1_at1/118+8269576..8273965retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g13860OsAffx.943.1.S1_at1/118+8269576..8273965retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g13870OsAffx.29181.1.S1_at11/118+8276619..8278991D-mannose binding lectin family protein
LOC_Os08g13880NANA8+8283927..8284870hypothetical protein
LOC_Os08g13890Os.27605.1.S1_at11/118+8290891..8293230Exonuclease, putative, expressed
LOC_Os08g13900OsAffx.16986.1.S1_at9/118+8294616..8295803expressed protein
LOC_Os08g13900Os.27718.1.A1_at1/118+8294616..8295803expressed protein
LOC_Os08g13910Os.56197.1.S1_at7/118+8301435..8305195hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27718.1.A1_at--410--8091Chr11:27709043..27709067 (25 bp)
GGAGCCAACGGTGGCTGCTACTCCA
NONE
Os.27718.1.A1_at--1140--2571Chr11:27709037..27709061 (25 bp)
AACGGTGGCTGCTACTCCACTTTCC
NONE
Os.27718.1.A1_at--441--10632Chr09:5461049..5461137 (25 bp)
TTCCCTCCCCGGCATGGTGGTAGCA
NONE
Os.27718.1.A1_at--298--3811Chr11:27708978..27709002 (25 bp)
CTCCCCGGCATGGTGGTAGCAGCTG
NONE
Os.27718.1.A1_at--822--6951Chr11:27708963..27708987 (25 bp)
GTAGCAGCTGCCCGACTGTCCGTCG
NONE
Os.27718.1.A1_at--229--3751Chr11:27708916..27708940 (25 bp)
CTCACCTCCCTGATGTGGAGACGAT
NONE
Os.27718.1.A1_at--662--1751Chr11:27708913..27708937 (25 bp)
ACCTCCCTGATGTGGAGACGATGGC
NONE
Os.27718.1.A1_at--962--1391Chr11:27708898..27708922 (25 bp)
AGACGATGGCGTTTCGTGGCATGGT
NONE
Os.27718.1.A1_at--175--10311Chr11:27708887..27708911 (25 bp)
TTTCGTGGCATGGTGACGGTTTGAT
NONE
Os.27718.1.A1_at--849--7051Chr11:27708819..27708843 (25 bp)
GTAACCACCGTGATGGAGATTAGGT
NONE
Os.27718.1.A1_at--831--8032Chr11:27708805..27708829 (25 bp)
GGAGATTAGGTTTCTTGGGATCAAA
NONE
Target Sequence 
GGAGCCAACGGTGGCTGCTACTCCACTTTCCCGGCATGGCGACGGTAGCGGTGGCGGCTGCTTCCCTCCCCGGCATGGTG
GTAGCAGCTGCCCGACTGTCCGTCGCCCCTTCCTCCCTGGCTGCCCCCTCACCTCCCTGATGTGGAGACGATGGCGTTTC
GTGGCATGGTGACGGTTTGATTTGTGAATATTTTGAGGATTTTGTGATTTGGGATGTTTATTTAGTAACCACCGTGATGG
AGATTAGGTTTCTTGGGATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27718.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis