Browse Element(s) Details


Os.27605.1.S1_at

Description gb:AK058766.1
DB_XREF= gi:32968784
TID=Os.27605.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27605 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-001-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-D09, full insert sequence.
FL= gb:AK058766.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1389011/11Exonuclease, putative, expressed
LOC_Os04g409005/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13860Os.48441.1.S1_at1/118+8269576..8273965retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g13860OsAffx.943.1.S1_at1/118+8269576..8273965retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g13870OsAffx.29181.1.S1_at11/118+8276619..8278991D-mannose binding lectin family protein
LOC_Os08g13880NANA8+8283927..8284870hypothetical protein
LOC_Os08g13890Os.27605.1.S1_at11/118+8290891..8293230Exonuclease, putative, expressed
LOC_Os08g13900OsAffx.16986.1.S1_at9/118+8294616..8295803expressed protein
LOC_Os08g13900Os.27718.1.A1_at1/118+8294616..8295803expressed protein
LOC_Os08g13910Os.56197.1.S1_at7/118+8301435..8305195hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27605.1.S1_at--310--7952Chr08:8292675..8292699 (25 bp)
GGATCCTAGAAGTCAAGTGCCCGTT
LOC_Os08g13890
Os.27605.1.S1_at--65--8411Chr08:8292732..8292756 (25 bp)
GGCGCGCTATGCCATACTATTACAT
LOC_Os08g13890
Os.27605.1.S1_at--1028--131Chr08:8292750..8292774 (25 bp)
ATTACATGCCACAGGTGCAGGGCCT
LOC_Os08g13890
Os.27605.1.S1_at--575--8632Chr08:8292797..8292821 (25 bp)
TGGGTCGAGCTCTACTGTTGGACTC
LOC_Os08g13890
Os.27605.1.S1_at--123--5351Chr08:8292828..8292852 (25 bp)
GAAGCAGCGTTTTCCGAGTACCTCG
LOC_Os08g13890
Os.27605.1.S1_at--341--6091Chr08:8292843..8292867 (25 bp)
GAGTACCTCGAGATCGCGGATACTG
LOC_Os08g13890
Os.27605.1.S1_at--969--572Chr08:8292875..8292899 (25 bp)
ATCCATGAAGTCCTGCGTGATTTCT
LOC_Os08g13890
Os.27605.1.S1_at--325--3572Chr08:8292950..8292974 (25 bp)
GCCGAAGCTAGATCCTTTGAACCAC
LOC_Os08g13890
Os.27605.1.S1_at--31--8372Chr08:8293058..8293082 (25 bp)
GGCGGTCATGTAGAATTCTTCCCAT
LOC_Os08g13890
Os.27605.1.S1_at--264--3291Chr08:8293165..8293189 (25 bp)
CAAATCGTTGGTGTTTTTACTGCGG
LOC_Os08g13890
Os.27605.1.S1_at--739--2991Chr08:8293205..8293229 (25 bp)
AATGTTCCATGATACGTCTTGTCGT
LOC_Os08g13890
Target Sequence 
GGATCCTAGAAGTCAAGTGCCCGTTCAACANGGGTAAGCCTGAGCTCGCTCTGCCATGGCGCGCTATGCCATACTATTAC
ATGCCACAGGTGCAGGGCCTGATGGAGATAATGGGCAGAGNTTGGGTCGAGCTCTACTGTTGGACTCCCAACGGAAGCAG
CGTTTTCCGAGTACCTCGAGATCGCGGATACTGGGAGCTCATCCATGAAGTCCTGCGTGATTTCTGGTGGGGGAATGTGA
TGCCGGCCCGGGAGCTGGTGCTGCTTGGTAAGGAGGCCGAAGCTAGATCCTTTGAACCACAGCCCAAGCACCGGTTGACA
AACCTGGTGATTTTTAGAAGCAGGAAGCTNGCTTCTGAAGCCAAGTTGTTGTGCAAGGATATTGGCGGTCATGTAGAATT
CTTCCCATGANTAGCTCTGCCAATGNCTGCACACTGTATTCNGATTATTTATTCTTTCAATCAAAAACATTNAATTGNNT
GACTAGTTCTCAAATCGTTGGTGTTTTTACTGCGGTTTTGGAGGGTATAAAATGTTCCATGATACGTCTTGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis