Browse Element(s) Details


Os.33800.1.S1_at

Description gb:AK074006.1
DB_XREF= gi:32984029
TID=Os.33800.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.33800 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033077D15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033077D15, full insert sequence.
FL= gb:AK074006.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1368011/11expressed protein
LOC_Os04g293005/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13650OsAffx.29179.1.S1_at10/118+8113327..8116887expressed protein
LOC_Os08g13650OsAffx.21416.1.S1_at3/118+8113327..8116887expressed protein
LOC_Os08g13650OsAffx.25582.1.S1_at2/118+8113327..8116887expressed protein
LOC_Os08g13650Os.57029.1.S1_at1/118+8113327..8116887expressed protein
LOC_Os08g13650Os.51832.1.S1_at1/118+8113327..8116887expressed protein
LOC_Os08g13660OsAffx.29180.1.S1_at11/118+8118681..8122030transposon protein, putative, unclassified
LOC_Os08g13660OsAffx.8356.1.S1_at4/118+8118681..8122030transposon protein, putative, unclassified
LOC_Os08g13660OsAffx.8356.1.S1_x_at3/118+8118681..8122030transposon protein, putative, unclassified
LOC_Os08g13670OsAffx.5805.1.S1_at11/118+8129503..8130503hypothetical protein
LOC_Os08g13680Os.33800.1.S1_at11/118+8141009..8142344expressed protein
LOC_Os08g13690Os.4880.1.S1_at10/118+8147026..814954160S ribosomal protein L7-1, putative, expressed
LOC_Os08g13700OsAffx.29181.1.S1_at1/118+8155044..8156000hypothetical protein
LOC_Os08g13710Os.7735.2.S1_x_at3/118+8161203..8162107hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33800.1.S1_at--1125--6031Chr08:8141338..8141362 (25 bp)
GAGATAGCCGCGTCTGCGATTGATT
LOC_Os08g13680
Os.33800.1.S1_at--629--6591Chr08:8141321..8141345 (25 bp)
GATTGATTTGGCGATAGCTGCTTCA
LOC_Os08g13680
Os.33800.1.S1_at--170--4771Chr08:8141305..8141329 (25 bp)
GCTGCTTCAACCTGTTTAGCTCATA
LOC_Os08g13680
Os.33800.1.S1_at--978--252Chr04:17185791..17185815 (25 bp)
ATATGAGAGCACCACATGACCTCCA
LOC_Os04g29300
Os.33800.1.S1_at--779--3872Chr04:17185816..17185840 (25 bp)
CTGTTTTAGGTTTGAGTCGCTCTTT
LOC_Os04g29300
Os.33800.1.S1_at--292--7232Chr04:17185831..17185855 (25 bp)
GTCGCTCTTTAGAGAGTTCTGCTCA
LOC_Os04g29300
Os.33800.1.S1_at--458--1232Chr04:17185845..17185869 (25 bp)
AGTTCTGCTCAGTGTGGTTTGCTTT
LOC_Os04g29300
Os.33800.1.S1_at--284--10271Chr08:8141145..8141169 (25 bp)
TTTCGGCTACTATCGTTTTCTGAGA
LOC_Os08g13680
Os.33800.1.S1_at--1064--3852Chr04:17185948..17186035 (25 bp)
CTGAGATTTGGTGTTTGTTCCGGGT
LOC_Os04g29300
Os.33800.1.S1_at--465--9171Chr08:8141101..8141125 (25 bp)
TGCCCTTTGCATTGCCCTTGTGTAA
LOC_Os08g13680
Os.33800.1.S1_at--946--7671Chr08:8141042..8141066 (25 bp)
GGGTTACTGTATCTCATTTATTCTA
LOC_Os08g13680
Target Sequence 
GAGATAGCCGCGTCTGCGATTGATTTGGCGATAGCTGCTTCAACCTGTTTAGCTCATATGAGAGCACCACATGACCTCCA
CTGTTTTAGGTTTGAGTCGCTCTTTAGAGAGTTCTGCTCAGTGTGGTTTGCTTTTGTGGCAGAAGAGCACAACCTTAATC
ATTTTGGTTGGATGTAGGTGGTTTTTAGGTTGTTTTCGGCTACTATCGTTTTCTGAGATTTGGTGTTTGTTCCGGGTTGC
CCTTTGCATTGCCCTTGTGTAATAGGATTGTTTGTGTTGCTGTTAAATTATTTGTCGGGTTACTGTATCTCATTTATTCT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33800.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis