Browse Element(s) Details


OsAffx.16982.1.S1_at

Description tigr:9636.m01358
TID=OsAffx.16982.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1374011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13710Os.7735.2.S1_x_at3/118+8161203..8162107hypothetical protein
LOC_Os08g13720NANA8+8178121..8180325transposon protein, putative, unclassified
LOC_Os08g13730OsAffx.29182.1.S1_at11/118+8182771..8183744hypothetical protein
LOC_Os08g13740OsAffx.16982.1.S1_at11/118+8185083..8185910hypothetical protein
LOC_Os08g13750NANA8+8188776..8194871retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13760OsAffx.21897.5.S1_x_at4/118+8195187..8198127retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13770OsAffx.5806.1.S1_at11/118+8202964..8203628hypothetical protein
LOC_Os08g13780OsAffx.16983.1.S1_at11/118+8210084..8212704U-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16982.1.S1_at--561--6311Chr08:8185603..8185627 (25 bp)
GTAGTAGTAGCCACCGATCGGACGT
LOC_Os08g13740
OsAffx.16982.1.S1_at--416--1771Chr08:8185591..8185615 (25 bp)
ACCGATCGGACGTCAAGTTGGGCGA
LOC_Os08g13740
OsAffx.16982.1.S1_at--88--1471Chr08:8185528..8185552 (25 bp)
AGAAGTGCCGCAGGTTCGCTGAGAA
LOC_Os08g13740
OsAffx.16982.1.S1_at--875--10631Chr08:8185514..8185538 (25 bp)
TTCGCTGAGAAGTGCATCGATCCTT
LOC_Os08g13740
OsAffx.16982.1.S1_at--206--1131Chr08:8185504..8185528 (25 bp)
AGTGCATCGATCCTTACTTCATCGT
LOC_Os08g13740
OsAffx.16982.1.S1_at--1067--4851Chr08:8185462..8185486 (25 bp)
GCTATGATCCCGAGACGAATCTTCA
LOC_Os08g13740
OsAffx.16982.1.S1_at--77--11Chr08:8185366..8185390 (25 bp)
ATCACCGACCGGAGTACGCCGACGA
LOC_Os08g13740
OsAffx.16982.1.S1_at--450--8451Chr08:8185262..8185286 (25 bp)
TGGCGCGAGTTCACGGACAAGTACA
LOC_Os08g13740
OsAffx.16982.1.S1_at--748--5611Chr08:8185247..8185271 (25 bp)
GACAAGTACATCATCGCGAGCGGGT
LOC_Os08g13740
OsAffx.16982.1.S1_at--207--1391Chr08:8185156..8185180 (25 bp)
AGACCCGCACGGACATGATCGACAA
LOC_Os08g13740
OsAffx.16982.1.S1_at--740--8851Chr08:8185141..8185165 (25 bp)
TGATCGACAAGCTGTGGCGCCACAT
LOC_Os08g13740
Target Sequence 
GTAGTAGTAGCCACCGATCGGACGTCAAGTTGGGCGACGCAGAGGAAGAAGAAGATGATGATGAGGATGAAGAAGAGAAG
TGCCGCAGGTTCGCTGAGAAGTGCATCGATCCTTACTTCATCGTCCTCGGATCGGCCTCCCGCTATGATCCCGAGACGAA
TCTTCATCCCGCCGGCGGCGGCGGCGGCGGCGACTCCTCCTCCGACCACCGTGATTCCTCTACCACCTGTGGCTGTCATC
ACCGACCGGAGTACGCCGACGATTCAGATGATGATGATGATGATGAGGAAGATGCGATCAAGAAAGCAGAGGAGGAGGAG
TCGTTGGAGCACAACGAGCTGTGGCGCGAGTTCACGGACAAGTACATCATCGCGAGCGGGTACGACGATCGGTTCAAGGA
GATGGATGCGATCGGGGAGGTCTACTTCGACACCACCCTGGACGAGGAGACCCGCACGGACATGATCGACAAGCTGTGGC
GCCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16982.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis