Browse Element(s) Details


OsAffx.5806.1.S1_at

Description tigr:9636.m01362
TID=OsAffx.5806.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1377011/11hypothetical protein
LOC_Os06g424503/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13720NANA8+8178121..8180325transposon protein, putative, unclassified
LOC_Os08g13730OsAffx.29182.1.S1_at11/118+8182771..8183744hypothetical protein
LOC_Os08g13740OsAffx.16982.1.S1_at11/118+8185083..8185910hypothetical protein
LOC_Os08g13750NANA8+8188776..8194871retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13760OsAffx.21897.5.S1_x_at4/118+8195187..8198127retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13770OsAffx.5806.1.S1_at11/118+8202964..8203628hypothetical protein
LOC_Os08g13780OsAffx.16983.1.S1_at11/118+8210084..8212704U-box domain containing protein
LOC_Os08g13790OsAffx.29183.1.S1_at11/118+8213932..8214414hypothetical protein
LOC_Os08g13800OsAffx.16984.1.S1_at11/118+8223768..8230396NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5806.1.S1_at--939--9012Chr08:8203238..8203262 (25 bp)
TGCAAGGCATCATCAGCTCTAGCTG
LOC_Os08g13770
OsAffx.5806.1.S1_at--624--8671Chr08:8203215..8203239 (25 bp)
TGTGTCCCAAACCATCTCGCTGGAG
LOC_Os08g13770
OsAffx.5806.1.S1_at--839--453Chr04:11511628..11511652 (25 bp)
ATCTCGCTGGAGTTGCCGTGGACAC
NONE
OsAffx.5806.1.S1_at--768--4751Chr08:8203176..8203200 (25 bp)
GCTGAGCCGCCTAAATCCATAGATG
LOC_Os08g13770
OsAffx.5806.1.S1_at--1022--1311Chr08:8203156..8203180 (25 bp)
AGATGGCGAGGCGTTGCCAGCTAAC
LOC_Os08g13770
OsAffx.5806.1.S1_at--815--8433Chr04:11511735..11511759 (25 bp)
GGCCATTGCCAGGTCGCCAAGGTGC
NONE
OsAffx.5806.1.S1_at--635--2891Chr08:8203077..8203101 (25 bp)
AAGGTGCTAGTTGTCGATATCCGGA
LOC_Os08g13770
OsAffx.5806.1.S1_at--459--8511Chr08:8203066..8203090 (25 bp)
TGTCGATATCCGGAAGTCGTTAATA
LOC_Os08g13770
OsAffx.5806.1.S1_at--824--9731Chr08:8203046..8203070 (25 bp)
TAATATATCATCCACAAGTTCGCGA
LOC_Os08g13770
OsAffx.5806.1.S1_at--342--1232Chr08:8203030..8203054 (25 bp)
AGTTCGCGATGGGTATCGTCGGACC
LOC_Os08g13770
OsAffx.5806.1.S1_at--192--8813Chr10:12320218..12320238 (21 bp)
TGTTGCCGGCACCTGTCATGATGCG
NONE
Target Sequence 
TGCAAGGCATCATCAGCTCTAGCTGTGTCCCAAACCATCTCGCTGGAGTTGCCGTGGACACCGCTGAGCCGCCTAAATCC
ATAGATGGCGAGGCGTTGCCAGCTAACGCTAGTCCCCATCATCATCCGCTGCCCGCCGGAGAAGGCCATTGCCAGGTCGC
CAAGGTGCTAGTTGTCGATATCCGGAAGTCGTTAATATATCATCCACAAGTTCGCGATGGGTATCGTCGGACCCCTGTTG
CCGGCACCTGTCATGATGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5806.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis