Browse Element(s) Details


OsAffx.16984.1.S1_at

Description tigr:9636.m01365
TID=OsAffx.16984.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1380011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13770OsAffx.5806.1.S1_at11/118+8202964..8203628hypothetical protein
LOC_Os08g13780OsAffx.16983.1.S1_at11/118+8210084..8212704U-box domain containing protein
LOC_Os08g13790OsAffx.29183.1.S1_at11/118+8213932..8214414hypothetical protein
LOC_Os08g13800OsAffx.16984.1.S1_at11/118+8223768..8230396NB-ARC domain containing protein
LOC_Os08g13810NANA8+8237408..8241968retrotransposon protein, putative, unclassified
LOC_Os08g13820NANA8+8243381..8244180retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13830NANA8+8245182..8245764retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13840OsAffx.5807.1.S1_at11/118+8252232..8253252WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16984.1.S1_at--1041--5931Chr08:8229833..8229857 (25 bp)
GAGCACCTTGGATTGGCAGGCATTA
LOC_Os08g13800
OsAffx.16984.1.S1_at--236--1011Chr08:8229896..8229920 (25 bp)
AGGATTTCTTCTTCGCTGACCTATT
LOC_Os08g13800
OsAffx.16984.1.S1_at--1069--3851Chr08:8229911..8229935 (25 bp)
CTGACCTATTTGTACCTCGGAGCAT
LOC_Os08g13800
OsAffx.16984.1.S1_at--911--7391Chr08:8229942..8229966 (25 bp)
GTGATGGAACACTTGCTTGCCTGCC
LOC_Os08g13800
OsAffx.16984.1.S1_at--1014--2731Chr08:8229986..8230010 (25 bp)
AAGAAGCCACTGGAGTTTCCACGCC
LOC_Os08g13800
OsAffx.16984.1.S1_at--349--10291Chr08:8230059..8230083 (25 bp)
TTTCTAACTCATGGACACTTGCGGT
LOC_Os08g13800
OsAffx.16984.1.S1_at--733--9311Chr08:8230122..8230146 (25 bp)
TAATGTCCCTTGAGAAACTACCCTG
LOC_Os08g13800
OsAffx.16984.1.S1_at--633--2391Chr08:8230136..8230160 (25 bp)
AAACTACCCTGCTTGGTCACACTTG
LOC_Os08g13800
OsAffx.16984.1.S1_at--21--2191Chr08:8230154..8230178 (25 bp)
ACACTTGCTCTCCTAGACAATTCAT
LOC_Os08g13800
OsAffx.16984.1.S1_at--706--871Chr08:8230209..8230233 (25 bp)
AGGCCTTCAGAGAGCTCAAGACCCT
LOC_Os08g13800
OsAffx.16984.1.S1_at--30--5011Chr08:8230283..8230307 (25 bp)
GCAGTGCCCCAGCTTCGAAGTTTAG
LOC_Os08g13800
Target Sequence 
GAGCACCTTGGATTGGCAGGCATTACAATTGGCAACAGCAAACAAGTCTCCAAAACCCTAAAAAGGATTTCTTCTTCGCT
GACCTATTTGTACCTCGGAGCATGCCAAAGTGATGGAACACTTGCTTGCCTGCCCATCTCTGAAAAGAAAAGGAAGAAGC
CACTGGAGTTTCCACGCCTCCAAACCATAAAGCTTGACGGTCATATTGGAAAAATGCCATACTGGATTTCTAACTCATGG
ACACTTGCGGTTATTAAACTTTACAGGACTAATCTCCAACAGAATCATATAATGTCCCTTGAGAAACTACCCTGCTTGGT
CACACTTGCTCTCCTAGACAATTCATATATTAGCGAGACATTGGTTTTCTATGATAAGGCCTTCAGAGAGCTCAAGACCC
TGGAGATTATTAGGCTAACCAAGTTGAAAACAGTTATATTTACAGAAGAAGCAGTGCCCCAGCTTCGAAGTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16984.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis