Browse Element(s) Details


OsAffx.16983.1.S1_at

Description tigr:9636.m01363
TID=OsAffx.16983.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1378011/11U-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13740OsAffx.16982.1.S1_at11/118+8185083..8185910hypothetical protein
LOC_Os08g13750NANA8+8188776..8194871retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13760OsAffx.21897.5.S1_x_at4/118+8195187..8198127retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13770OsAffx.5806.1.S1_at11/118+8202964..8203628hypothetical protein
LOC_Os08g13780OsAffx.16983.1.S1_at11/118+8210084..8212704U-box domain containing protein
LOC_Os08g13790OsAffx.29183.1.S1_at11/118+8213932..8214414hypothetical protein
LOC_Os08g13800OsAffx.16984.1.S1_at11/118+8223768..8230396NB-ARC domain containing protein
LOC_Os08g13810NANA8+8237408..8241968retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16983.1.S1_at--476--1651Chr08:8211435..8211459 (25 bp)
AGCGCTCTTGGCTGTATCAACAAAG
LOC_Os08g13780
OsAffx.16983.1.S1_at--448--1391Chr08:8211877..8211901 (25 bp)
AGACCCAGGTTTGGACCACCGTATG
LOC_Os08g13780
OsAffx.16983.1.S1_at--665--1231Chr08:8212198..8212222 (25 bp)
AGTTGAGGCCCCTGCAGAATTCAGA
LOC_Os08g13780
OsAffx.16983.1.S1_at--38--10171Chr08:8212228..8212252 (25 bp)
TATCATCCCGAACCCATTACAAGAT
LOC_Os08g13780
OsAffx.16983.1.S1_at--1006--1291Chr08:8212249..8212273 (25 bp)
AGATGATCCTAGTTGCAGCTCATAA
LOC_Os08g13780
OsAffx.16983.1.S1_at--962--1691Chr08:8212285..8212309 (25 bp)
AGCCAAATCTTATCTGCTCTAGTTT
LOC_Os08g13780
OsAffx.16983.1.S1_at--492--10571Chr08:8212350..8212374 (25 bp)
TTCGAGATCCCGCAAAACCTTGTTT
LOC_Os08g13780
OsAffx.16983.1.S1_at--123--7311Chr08:8212382..8212406 (25 bp)
GTGCGGCAATGTTATGGTTGACCCT
LOC_Os08g13780
OsAffx.16983.1.S1_at--899--631Chr08:8212395..8212419 (25 bp)
ATGGTTGACCCTGTTATGATTGCAA
LOC_Os08g13780
OsAffx.16983.1.S1_at--415--3811Chr08:8212536..8212560 (25 bp)
CTGCGTACGGGCTTGGTTTGATAAG
LOC_Os08g13780
OsAffx.16983.1.S1_at--605--9791Chr08:8212557..8212581 (25 bp)
TAAGCATGGACACATCTGCCCAGTA
LOC_Os08g13780
Target Sequence 
AGCGCTCTTGGCTGTATCAACAAAGAGGAAATAGATGGACTTCTTGTTGTAGAAAGACCCAGGTTTGGACCACCGTATGT
GGCATGTAATGAATTCACACTTATGTGGTCACTGAAAAATGATAGGAAGGTGTGGGATGATATTAGGCTTGTGCGCAAGT
TGAGGCCCCTGCAGAATTCAGAGAAAATATCATCCCGAACCCATTACAAGATGATCCTAGTTGCAGCTCATAAGCATGGT
CGAAAGCCAAATCTTATCTGCTCTAGTTTGTTCACTGAGGATCGAAAGGCCAAGGGCAAGCTGGAAGGTTTCGAGATCCC
GCAAAACCTTGTTTGCCCCTTGTGCGGCAATGTTATGGTTGACCCTGTTATGATTGCAACAGGAAAGACTATGGACCGTC
ACTGCGTACGGGCTTGGTTTGATAAGCATGGACACATCTGCCCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis